trinucleotide repeat containing 4

 jump to detail

Synonym

MGC57297, ERDA4, CAGH4, BRUNOL1, TNRC4, CELF3, trinucleotide repeat containing 4

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:2.40 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:23.50 artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
GeneChip cerebrum:6.80 cerebellum:6.90 brain stem:6.79 corpus callosum/glia:6.77 pineal gland:- peripheral nerve:6.22 spine:6.46 retina:- eye:- artery/aorta:6.39 vein:6.60 lymphnode:6.28 peripheral blood:- spleen:6.17 thymus:6.35 bone marrow:6.63 adipose:6.45 bone:- skin:6.07
CAGE cerebrum:3.85 cerebellum:- brain stem:1.73 corpus callosum/glia:2.38 pineal gland:5.67 peripheral nerve:- spine:1.59 retina:- eye:- artery/aorta:0.34 vein:0 lymphnode:0.03 peripheral blood:- spleen:0 thymus:0.06 bone marrow:- adipose:0 bone:- skin:-
RNA-seq cerebrum:1.66 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0.08 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:- esophagus:- stomach:- intestine:- colon:-     liver/hepato:-        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:8.90 breast:- salivary:-
GeneChip uterus:6.26 placenta:6.23 prostate:6.07 ovary:6.39 testis:6.06 heart:6.62 muscle:6.85 esophagus:6.46 stomach:6.47 intestine:6.45 colon:6.65 liver/hepato:6.60 lung:6.16 bladder:- kidney:6.66 pituitary:7.13 thyroid/parathyroid:6.19 adrenal gland:6.66 pancreas:6.97 breast:6.17 salivary:6.55
CAGE uterus:0.09 placenta:0 prostate:0.27 ovary:0.14 testis:0.56 heart:0 muscle:0 esophagus:0 stomach:- intestine:1.39 colon:1.28     liver/hepato:0    lung:0.10 bladder:0.26 kidney:0 pituitary:4.54 thyroid/parathyroid:0 adrenal gland:- pancreas:0.94 breast:0 salivary:0
RNA-seq uterus:- placenta:- prostate:0.00 ovary:0.01 testis:0.00 heart:0.00 muscle:0 esophagus:- stomach:- intestine:- colon:0.25     liver/hepato:0.00        lung:0.00    bladder:- kidney:0.00 pituitary:- thyroid/parathyroid:0.00 adrenal gland:0.00 pancreas:- breast:0.00 salivary:-

Gene Information

IDs

Refseq ID NM_007185
Gene ID 11189
Unigene ID Hs.623956
Probe set ID 206817_x_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000159409
GTEx ID ENSG00000159409

Orthologous Gene

Mouse[1]  NM_172434
Rat[1]  NM_172434

Chromosomal Region

1q21.3  [151,674,880  -  151,689,290]

Gene Family (Interpro ID)

IPR002343  Paraneoplastic encephalomyelitis antigen
IPR000504  RNA recognition motif, RNP-1

Link to Pubmed  (Pubmed ID)

9225980
10893231
11158314
12477932
14702039
15009664
16169070
16713569
17725984
19913121
20628086
21900206

Gene Ontology  (GO ID)

Biological Process

GO:0000398  nuclear mRNA splicing, via spliceosome
GO:0048026  positive regulation of nuclear mRNA splicing, via spliceosome
GO:0000381  regulation of alternative nuclear mRNA splicing, via spliceosome
GO:0008380  RNA splicing
GO:0030317  sperm motility
GO:0007283  spermatogenesis

Cellular Component

GO:0005737  cytoplasm
GO:0005634  nucleus

Molecular Function

GO:0003729  mRNA binding
GO:0000166  nucleotide binding
GO:0003723  RNA binding