collagen, type IV, alpha 3 (Goodpasture antigen)

jump to detail

Synonym

collagen, type IV, alpha 3 (Goodpasture antigen), Collagen alpha-3(IV) chain precursor, COL4A3, Goodpasture antigen

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:10.70

cerebellum:12.60

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:30.70

spine:-

retina:237.30

eye:123.40

artery/aorta:30

vein:-

lymphnode:10.10

peripheral blood:-

spleen:56.70

thymus:25.80

bone marrow:-

adipose:-

bone:-

skin:43.20

GeneChip

cerebrum:2.96

cerebellum:2.85

brain stem:2.95

corpus callosum/glia:2.82

pineal gland:-

peripheral nerve:2.91

spine:2.97

retina:-

eye:-

artery/aorta:3.11

vein:2.91

lymphnode:3.12

peripheral blood:-

spleen:3.26

thymus:2.97

bone marrow:3.03

adipose:3.01

bone:-

skin:3.03

CAGE

cerebrum:1.11

cerebellum:-

brain stem:1.50

corpus callosum/glia:1.31

pineal gland:2.87

peripheral nerve:-

spine:1.88

retina:-

eye:-

artery/aorta:2.64

vein:1.89

lymphnode:2.05

peripheral blood:-

spleen:2.14

thymus:0.06

bone marrow:-

adipose:0.26

bone:-

skin:-

RNA-seq

cerebrum:0.30

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:1.64

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:0.02

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:-

placenta:-

prostate:11.30

ovary:-

testis:17.30

heart:-

muscle:-

esophagus:-

stomach:-

intestine:-

colon:25.40

liver/hepato:10.60

lung:29.30

bladder:-

kidney:62.40

pituitary:579.90

thyroid/parathyroid:163.70

adrenal gland:-

pancreas:17.80

breast:18.60

salivary:-

GeneChip

uterus:2.89

placenta:2.88

prostate:3

ovary:2.92

testis:2.84

heart:3.03

muscle:3.11

esophagus:3.12

stomach:2.91

intestine:3.21

colon:2.94

liver/hepato:2.92

lung:2.96

bladder:-

kidney:3.38

pituitary:3.41

thyroid/parathyroid:3.20

adrenal gland:3.44

pancreas:3.09

breast:2.92

salivary:2.95

CAGE

uterus:1.07

placenta:0.24

prostate:1.85

ovary:1.31

testis:1.20

heart:2.39

muscle:2.46

esophagus:0.97

stomach:-

intestine:0.87

colon:0.99

liver/hepato:0.26

lung:2.90

bladder:1.35

kidney:3.58

pituitary:2.94

thyroid/parathyroid:2.80

adrenal gland:-

pancreas:0.94

breast:0.55

salivary:1.00

RNA-seq

uterus:-

placenta:-

prostate:0.53

ovary:0.41

testis:0.62

heart:0.71

muscle:0.46

esophagus:-

stomach:-

intestine:-

colon:0.03

liver/hepato:0.11

lung:1.51

bladder:-

kidney:3.42

pituitary:-

thyroid/parathyroid:2.31

adrenal gland:1.57

pancreas:-

breast:0.26

salivary:-

IDs

Refseq ID	NM_000091
Gene ID	1285
Unigene ID	Hs.570065
Probe set ID	216893_s_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000169031
GTEx ID	ENSG00000169031

Orthologous Gene

Mouse[1]	NM_007734
Rat[1]	NM_001135759

Chromosomal Region

2q36.3 [228,029,281 - 228,179,508]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

Gene Ontology (GO ID)

Biological Process

GO:0006919	activation of caspase activity
GO:0007411	axon guidance
GO:0008015	blood circulation
GO:0007155	cell adhesion
GO:0008283	cell proliferation
GO:0007166	cell surface receptor linked signal transduction
GO:0030574	collagen catabolic process
GO:0022617	extracellular matrix disassembly
GO:0030198	extracellular matrix organization
GO:0032836	glomerular basement membrane development
GO:0016525	negative regulation of angiogenesis
GO:0008285	negative regulation of cell proliferation
GO:0007605	sensory perception of sound

Cellular Component

GO:0005604	basement membrane
GO:0005587	collagen type IV
GO:0005788	endoplasmic reticulum lumen
GO:0005576	extracellular region

Molecular Function

GO:0005201	extracellular matrix structural constituent
GO:0005178	integrin binding
GO:0008191	metalloendopeptidase inhibitor activity
GO:0005515	protein binding
GO:0005198	structural molecule activity

collagen, type IV, alpha 3 (Goodpasture antigen)

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function