ligatin

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Synonym

HCA56, ligatin, Ligatin, Hepatocellular carcinoma-associated antigen 56, LGTN

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:29.60 cerebellum:25.20 brain stem:- corpus callosum/glia:87.50 pineal gland:- peripheral nerve:- spine:112.30 retina:- eye:47 artery/aorta:239.80 vein:66.60 lymphnode:20.20 peripheral blood:127.50 spleen:56.70 thymus:64.40 bone marrow:- adipose:40.30 bone:64 skin:19.20
GeneChip cerebrum:6.85 cerebellum:6.40 brain stem:6.95 corpus callosum/glia:7.24 pineal gland:- peripheral nerve:7.25 spine:7.09 retina:- eye:- artery/aorta:7.73 vein:7.60 lymphnode:7.62 peripheral blood:- spleen:7.53 thymus:7.63 bone marrow:7.29 adipose:7.89 bone:- skin:7.83
CAGE cerebrum:2.55 cerebellum:- brain stem:2.77 corpus callosum/glia:3.00 pineal gland:2.35 peripheral nerve:- spine:2.56 retina:- eye:- artery/aorta:3.04 vein:3.03 lymphnode:3.09 peripheral blood:- spleen:2.61 thymus:3.18 bone marrow:- adipose:2.95 bone:- skin:-
RNA-seq cerebrum:2.29 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:4.27 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:3.57 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:91.10 placenta:65.60 prostate:146.40 ovary:37.30 testis:47.60 heart:25.50 muscle:- esophagus:342.80 stomach:- intestine:- colon:59.40     liver/hepato:63.30        lung:73.30    bladder:- kidney:41.60 pituitary:116 thyroid/parathyroid:- adrenal gland:101.60 pancreas:35.60 breast:18.60 salivary:-
GeneChip uterus:8.04 placenta:7.49 prostate:8.09 ovary:8.30 testis:7.69 heart:7.41 muscle:8.13 esophagus:7.67 stomach:7.50 intestine:7.84 colon:7.77 liver/hepato:7.33 lung:7.50 bladder:- kidney:7.76 pituitary:7.35 thyroid/parathyroid:7.91 adrenal gland:7.64 pancreas:8.53 breast:8.01 salivary:8.31
CAGE uterus:3.23 placenta:2.65 prostate:3.22 ovary:3.25 testis:2.82 heart:2.57 muscle:2.89 esophagus:3.13 stomach:- intestine:2.66 colon:3.11     liver/hepato:2.87    lung:2.76 bladder:2.89 kidney:2.93 pituitary:2.57 thyroid/parathyroid:3.32 adrenal gland:- pancreas:3.61 breast:3.24 salivary:3.44
RNA-seq uterus:- placenta:- prostate:4.72 ovary:4.21 testis:3.90 heart:2.83 muscle:3.68 esophagus:- stomach:- intestine:- colon:3.98     liver/hepato:3.25        lung:3.92    bladder:- kidney:3.81 pituitary:- thyroid/parathyroid:4.19 adrenal gland:3.92 pancreas:- breast:4.03 salivary:-

Gene Information

IDs

Refseq ID NM_006893
Gene ID 1939
Unigene ID Hs.497581
Probe set ID 218253_s_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000143486
GTEx ID ENSG00000143486

Orthologous Gene

Mouse[4]  NM_001136070, NM_010709
Rat [0]  

Chromosomal Region

1q32.1  [206,744,620  -  206,785,904]

Gene Family (Interpro ID)

IPR002478  Pseudouridine synthase/archaeosine transglycosylase
IPR015947  Pseudouridine synthase/archaeosine transglycosylase-like

Link to Pubmed  (Pubmed ID)

2482295
7085778
7299841
8125298
12097419
12477932
14702039
15302935
17353931
20566627
21145461
22939629
23277564
24250222
24816145

Gene Ontology  (GO ID)

Biological Process

GO:0006886  intracellular protein transport

Cellular Component

GO:0005737  cytoplasm

Molecular Function

GO:0004872  receptor activity
GO:0003743  translation initiation factor activity