transmembrane protein 48

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Synonym

Transmembrane protein 48, FLJ12556, NDC1, FLJ34120, transmembrane protein 48, hNDC1, FLJ10407, TMEM48, Nucleoporin NDC1, RP4-654H19.1

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:33.20 cerebellum:37.80 brain stem:- corpus callosum/glia:29.20 pineal gland:- peripheral nerve:- spine:- retina:237.30 eye:- artery/aorta:60 vein:- lymphnode:182 peripheral blood:18.20 spleen:18.90 thymus:25.80 bone marrow:19.70 adipose:- bone:51.20 skin:38.40
GeneChip cerebrum:3.01 cerebellum:2.79 brain stem:3.02 corpus callosum/glia:3.18 pineal gland:- peripheral nerve:3.17 spine:3.13 retina:- eye:- artery/aorta:3.14 vein:2.99 lymphnode:3.81 peripheral blood:- spleen:3.49 thymus:4.56 bone marrow:4.04 adipose:3.37 bone:- skin:3.75
CAGE cerebrum:2.44 cerebellum:- brain stem:2.58 corpus callosum/glia:2.82 pineal gland:2.18 peripheral nerve:- spine:2.43 retina:- eye:- artery/aorta:2.24 vein:2.66 lymphnode:3.31 peripheral blood:- spleen:2.93 thymus:3.69 bone marrow:- adipose:2.96 bone:- skin:-
RNA-seq cerebrum:1.23 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:1.32 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:1.72 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:45.60 placenta:72.90 prostate:33.80 ovary:37.30 testis:43.30 heart:25.50 muscle:- esophagus:- stomach:21.20 intestine:- colon:17     liver/hepato:21.10        lung:63.50    bladder:125.60 kidney:72.80 pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:111.50 salivary:-
GeneChip uterus:3.37 placenta:3.28 prostate:3.38 ovary:3.28 testis:4.44 heart:3.26 muscle:3.22 esophagus:3.56 stomach:3.51 intestine:3.66 colon:4.08 liver/hepato:3.36 lung:3.28 bladder:- kidney:3.21 pituitary:2.91 thyroid/parathyroid:3.12 adrenal gland:3.21 pancreas:3.28 breast:3.59 salivary:3.23
CAGE uterus:2.94 placenta:2.62 prostate:2.46 ovary:2.48 testis:2.99 heart:2.34 muscle:2.08 esophagus:2.95 stomach:- intestine:2.80 colon:3.13     liver/hepato:2.98    lung:2.36 bladder:2.36 kidney:2.84 pituitary:2.38 thyroid/parathyroid:2.59 adrenal gland:- pancreas:2.71 breast:2.53 salivary:2.72
RNA-seq uterus:- placenta:- prostate:1.18 ovary:1.41 testis:2.78 heart:1.01 muscle:1.12 esophagus:- stomach:- intestine:- colon:1.22     liver/hepato:0.65        lung:0.71    bladder:- kidney:1.52 pituitary:- thyroid/parathyroid:1.96 adrenal gland:0.00 pancreas:- breast:1.52 salivary:-

Gene Information

IDs

Refseq ID NM_018087
Gene ID 55706
Unigene ID Hs.476525
Probe set ID 218073_s_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000058804
GTEx ID ENSG00000058804

Orthologous Gene

Mouse[2]  NM_028355
Rat[1]  NM_001025023

Chromosomal Region

1p32.3  [54,231,133  -  54,304,533]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

12477932
12958361
14702039
15489334
16565220
16600873
16702233
16710414
16779818
17081983
19703420
19782045
19946888
20360068
21139048
21890473
21906983
21963094
21987572
23000965
23314748
24816145

Gene Ontology  (GO ID)

Biological Process

GO:0051028  mRNA transport
GO:0051292  nuclear pore complex assembly
GO:0031081  nuclear pore distribution
GO:0015031  protein transport

Cellular Component

GO:0031965  nuclear membrane
GO:0005643  nuclear pore

Molecular Function

GO:0017056  structural constituent of nuclear pore