SET domain and mariner transposase fusion gene

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Synonym

METNASE, SETMAR, SET domain and mariner transposase fusion gene

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:28.40 cerebellum:25.20 brain stem:- corpus callosum/glia:87.50 pineal gland:- peripheral nerve:- spine:- retina:- eye:11.80 artery/aorta:- vein:66.60 lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:40.30 bone:51.20 skin:19.20
GeneChip cerebrum:3.62 cerebellum:3.08 brain stem:3.73 corpus callosum/glia:3.51 pineal gland:- peripheral nerve:3.65 spine:3.48 retina:- eye:- artery/aorta:4.19 vein:3.96 lymphnode:3.22 peripheral blood:- spleen:3.21 thymus:3.74 bone marrow:3.13 adipose:3.80 bone:- skin:3.63
CAGE cerebrum:2.31 cerebellum:- brain stem:2.45 corpus callosum/glia:2.32 pineal gland:2.19 peripheral nerve:- spine:2.59 retina:- eye:- artery/aorta:2.84 vein:2.63 lymphnode:2.02 peripheral blood:- spleen:1.80 thymus:2.78 bone marrow:- adipose:3.03 bone:- skin:-
RNA-seq cerebrum:0.54 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:2.26 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:1.52 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:82 placenta:3.60 prostate:- ovary:37.30 testis:4.30 heart:51.10 muscle:- esophagus:- stomach:- intestine:97.20 colon:8.50     liver/hepato:10.60        lung:4.90    bladder:- kidney:31.20 pituitary:- thyroid/parathyroid:- adrenal gland:50.80 pancreas:26.70 breast:- salivary:-
GeneChip uterus:4.53 placenta:3.14 prostate:4.69 ovary:4.34 testis:3.82 heart:3.71 muscle:3.97 esophagus:3.72 stomach:3.40 intestine:3.55 colon:3.45 liver/hepato:3.29 lung:3.22 bladder:- kidney:3.69 pituitary:3.60 thyroid/parathyroid:4.17 adrenal gland:3.98 pancreas:3.08 breast:4.44 salivary:4.07
CAGE uterus:2.96 placenta:2.12 prostate:3.06 ovary:2.82 testis:2.41 heart:2.20 muscle:2.24 esophagus:2.32 stomach:- intestine:1.87 colon:2.18     liver/hepato:1.84    lung:2.17 bladder:2.58 kidney:2.25 pituitary:2.40 thyroid/parathyroid:2.73 adrenal gland:- pancreas:2.60 breast:3.09 salivary:2.39
RNA-seq uterus:- placenta:- prostate:1.70 ovary:2.88 testis:2.23 heart:0.44 muscle:1.83 esophagus:- stomach:- intestine:- colon:1.54     liver/hepato:0.71        lung:1.06    bladder:- kidney:1.53 pituitary:- thyroid/parathyroid:1.62 adrenal gland:1.64 pancreas:- breast:1.41 salivary:-

Gene Information

IDs

Refseq ID NM_006515
Gene ID 6419
Unigene ID Hs.475300
Probe set ID 206554_x_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000170364
GTEx ID ENSG00000170364

Orthologous Gene

Mouse [0]  
Rat [0]  

Chromosomal Region

3p26.1  [4,344,988  -  4,359,251]

Gene Family (Interpro ID)

IPR007728  Pre-SET domain
IPR003606  Pre-SET zinc-binding sub-group

Link to Pubmed  (Pubmed ID)

7670491
8125298
8619474
9110174
9461395
12477932
15489334
16169070
16332963
16672366
16989604
17130240
17403897
17877369
18263876
18498648
18773976
18790802
19390626
19458360
20416268
20457750
20800603
21124928
21187428
21491884
22231448
23455924
24024966
24573677

Gene Ontology  (GO ID)

Biological Process

GO:0000737  DNA catabolic process, endonucleolytic
GO:0000729  DNA double-strand break processing
GO:0015074  DNA integration
GO:0071157  negative regulation of cell cycle arrest
GO:0006313  transposition, DNA-mediated

Cellular Component

GO:0005694  chromosome
GO:0005634  nucleus

Molecular Function

GO:0004519  endonuclease activity
GO:0018024  histone-lysine N-methyltransferase activity
GO:0005515  protein binding
GO:0042803  protein homodimerization activity
GO:0043566  structure-specific DNA binding
GO:0004803  transposase activity
GO:0008270  zinc ion binding