SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2

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Synonym

BAF60B, 60 kDa BRG-1/Brm-associated factor subunit B, SMARCD2, CRACD2, BRG1-associated factor 60B, PRO2451

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:28.40 cerebellum:12.60 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:88.20 artery/aorta:- vein:- lymphnode:101.10 peripheral blood:18.20 spleen:18.90 thymus:25.80 bone marrow:196.80 adipose:40.30 bone:25.60 skin:28.80
GeneChip cerebrum:5.63 cerebellum:6.45 brain stem:5.48 corpus callosum/glia:6.17 pineal gland:- peripheral nerve:6.50 spine:5.84 retina:- eye:- artery/aorta:6.79 vein:6.69 lymphnode:7.25 peripheral blood:- spleen:7.44 thymus:7.12 bone marrow:6.86 adipose:6.89 bone:- skin:7.32
CAGE cerebrum:2.65 cerebellum:- brain stem:2.79 corpus callosum/glia:2.99 pineal gland:2.29 peripheral nerve:- spine:2.63 retina:- eye:- artery/aorta:3.42 vein:3.80 lymphnode:3.58 peripheral blood:- spleen:3.47 thymus:3.84 bone marrow:- adipose:3.39 bone:- skin:-
RNA-seq cerebrum:2.51 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:4.48 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:4.10 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:45.60 placenta:61.90 prostate:90.10 ovary:37.30 testis:47.60 heart:25.50 muscle:20.10 esophagus:- stomach:42.50 intestine:32.40 colon:93.30     liver/hepato:52.80        lung:53.80    bladder:- kidney:20.80 pituitary:- thyroid/parathyroid:- adrenal gland:101.60 pancreas:53.30 breast:120.80 salivary:-
GeneChip uterus:6.50 placenta:7.41 prostate:6.80 ovary:6.77 testis:7.03 heart:5.99 muscle:5.65 esophagus:7.35 stomach:7.01 intestine:6.39 colon:6.74 liver/hepato:6.98 lung:7.07 bladder:- kidney:6.16 pituitary:6.77 thyroid/parathyroid:6.77 adrenal gland:6.82 pancreas:7.10 breast:7.68 salivary:7.46
CAGE uterus:3.36 placenta:3.73 prostate:3.55 ovary:3.18 testis:3.36 heart:2.75 muscle:2.53 esophagus:3.76 stomach:- intestine:3.52 colon:3.72     liver/hepato:3.12    lung:3.42 bladder:3.44 kidney:3.03 pituitary:3.05 thyroid/parathyroid:3.37 adrenal gland:- pancreas:3.96 breast:3.38 salivary:3.83
RNA-seq uterus:- placenta:- prostate:4.71 ovary:4.13 testis:4.73 heart:2.19 muscle:2.39 esophagus:- stomach:- intestine:- colon:3.98     liver/hepato:4.30        lung:4.01    bladder:- kidney:4.19 pituitary:- thyroid/parathyroid:4.13 adrenal gland:4.31 pancreas:- breast:4.33 salivary:-

Gene Information

IDs

Refseq ID NM_001098426
Gene ID 6603
Unigene ID Hs.250581
Probe set ID 201827_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000108604
GTEx ID ENSG00000108604

Orthologous Gene

Mouse[4]  NM_001130187, NM_031878
Rat [0]  

Chromosomal Region

17q23.3  [61,909,441  -  61,920,351]

Gene Family (Interpro ID)

IPR019835  SWIB domain
IPR003121  SWIB/MDM2 domain

Link to Pubmed  (Pubmed ID)

8804307
8895581
9693044
10382302
10943845
11726552
12477932
12665591
14559996
15231747
15489334
16217013
16964243
17081983
17474147
20148946
20305087
20308539
20360068
21139048
21145461
21549307
21890473
21906983
21963094
22505724
22939629
23000965
24457600
24816145

Gene Ontology  (GO ID)

Biological Process

GO:0006338  chromatin remodeling
GO:0006337  nucleosome disassembly
GO:0006357  regulation of transcription from RNA polymerase II promoter
GO:0006351  transcription, DNA-dependent

Cellular Component

GO:0016514  SWI/SNF complex

Molecular Function

GO:0003713  transcription coactivator activity