small nuclear ribonucleoprotein polypeptides B and B1

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Synonym

COD, SNRPB, snRNP-B, SmB/SmB', Sm protein B/B', SNRPB1, Sm-B/Sm-B'

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:54.50

cerebellum:12.60

brain stem:-

corpus callosum/glia:116.60

pineal gland:148.30

peripheral nerve:61.30

spine:112.30

retina:-

eye:188.10

artery/aorta:119.90

vein:133.30

lymphnode:202.20

peripheral blood:164

spleen:37.80

thymus:64.40

bone marrow:78.70

adipose:363

bone:64

skin:48

GeneChip

cerebrum:6.70

cerebellum:7.66

brain stem:6.41

corpus callosum/glia:6.97

pineal gland:-

peripheral nerve:7.30

spine:7

retina:-

eye:-

artery/aorta:7.89

vein:8.02

lymphnode:8.64

peripheral blood:-

spleen:8.38

thymus:9.08

bone marrow:8.36

adipose:8.12

bone:-

skin:8.48

CAGE

cerebrum:2.91

cerebellum:-

brain stem:2.69

corpus callosum/glia:2.57

pineal gland:2.79

peripheral nerve:-

spine:2.65

retina:-

eye:-

artery/aorta:3.50

vein:3.76

lymphnode:3.80

peripheral blood:-

spleen:3.72

thymus:4.06

bone marrow:-

adipose:3.34

bone:-

skin:-

RNA-seq

cerebrum:4.30

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:5.31

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:4.98

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:91.10

placenta:80.10

prostate:67.60

ovary:111.80

testis:26

heart:191.60

muscle:40.20

esophagus:-

stomach:-

intestine:32.40

colon:67.80

liver/hepato:10.60

lung:151.50

bladder:-

kidney:52

pituitary:-

thyroid/parathyroid:-

adrenal gland:50.80

pancreas:160

breast:46.50

salivary:-

GeneChip

uterus:7.97

placenta:7.98

prostate:7.99

ovary:8.12

testis:8.79

heart:7.35

muscle:7.65

esophagus:8.93

stomach:7.89

intestine:8.01

colon:8.32

liver/hepato:7.48

lung:8.22

bladder:-

kidney:7.75

pituitary:7.68

thyroid/parathyroid:8.21

adrenal gland:7.93

pancreas:7.47

breast:8.72

salivary:7.85

CAGE

uterus:3.44

placenta:3.66

prostate:3.30

ovary:3.53

testis:3.81

heart:3.53

muscle:3.89

esophagus:3.91

stomach:-

intestine:3.45

colon:3.83

liver/hepato:3.56

lung:3.61

bladder:3.36

kidney:3.36

pituitary:3.15

thyroid/parathyroid:3.45

adrenal gland:-

pancreas:3.54

breast:3.27

salivary:3.50

RNA-seq

uterus:-

placenta:-

prostate:5.00

ovary:5.16

testis:5.56

heart:3.97

muscle:4.92

esophagus:-

stomach:-

intestine:-

colon:4.62

liver/hepato:4.40

lung:6.06

bladder:-

kidney:4.76

pituitary:-

thyroid/parathyroid:5.27

adrenal gland:5.89

pancreas:-

breast:4.45

salivary:-

IDs

Refseq ID	NM_003091
Gene ID	6628
Unigene ID	Hs.83753
Probe set ID	208821_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000125835
GTEx ID	ENSG00000125835

Orthologous Gene

Mouse[1]	NM_009225
Rat[1]	NM_134358

Chromosomal Region

20p13 [2,442,280 - 2,451,499]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

IPR001163	Like-Sm ribonucleoprotein (LSM) domain
IPR006649	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type
IPR017131	Small ribonucleoprotein associated, SmB/SmN

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

GO:0010467	gene expression
GO:0008334	histone mRNA metabolic process
GO:0031124	mRNA 3'-end processing
GO:0034660	ncRNA metabolic process
GO:0000398	nuclear mRNA splicing, via spliceosome
GO:0016070	RNA metabolic process
GO:0008380	RNA splicing
GO:0000387	spliceosomal snRNP assembly
GO:0006369	termination of RNA polymerase II transcription
GO:0006366	transcription from RNA polymerase II promoter

Cellular Component

GO:0071013	catalytic step 2 spliceosome
GO:0005829	cytosol
GO:0071204	histone pre-mRNA 3'end processing complex
GO:0005654	nucleoplasm
GO:0030532	small nuclear ribonucleoprotein complex
GO:0005681	spliceosomal complex
GO:0005689	U12-type spliceosomal complex
GO:0005683	U7 snRNP

Molecular Function

GO:0071208	histone pre-mRNA DCP binding
GO:0005515	protein binding

small nuclear ribonucleoprotein polypeptides B and B1

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function