sialophorin

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Synonym

CD43 antigen, Sialophorin, SPN, CD43, leukosialin, Leukosialin precursor, GALGP, Galactoglycoprotein, Leukocyte sialoglycoprotein, GPL115, LSN, sialophorin (leukosialin, CD43)

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:3.60 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:66.60 lymphnode:30.30 peripheral blood:164 spleen:151.30 thymus:206.10 bone marrow:59 adipose:- bone:12.80 skin:24
GeneChip cerebrum:6.96 cerebellum:7.04 brain stem:6.92 corpus callosum/glia:7 pineal gland:- peripheral nerve:6.71 spine:6.81 retina:- eye:- artery/aorta:6.80 vein:6.58 lymphnode:7.45 peripheral blood:- spleen:7.49 thymus:7.75 bone marrow:7.28 adipose:6.43 bone:- skin:6.82
CAGE cerebrum:1.24 cerebellum:- brain stem:1.97 corpus callosum/glia:2.15 pineal gland:0.92 peripheral nerve:- spine:2.50 retina:- eye:- artery/aorta:1.91 vein:3.79 lymphnode:3.85 peripheral blood:- spleen:3.47 thymus:5.14 bone marrow:- adipose:2.81 bone:- skin:-
RNA-seq cerebrum:0.19 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:3.00 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0.62 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:- prostate:11.30 ovary:- testis:- heart:- muscle:- esophagus:- stomach:- intestine:- colon:17     liver/hepato:31.70        lung:9.80    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-
GeneChip uterus:6.76 placenta:6.65 prostate:6.70 ovary:6.74 testis:6.92 heart:6.66 muscle:6.33 esophagus:6.65 stomach:6.89 intestine:6.52 colon:6.59 liver/hepato:6.88 lung:6.97 bladder:- kidney:6.79 pituitary:6.79 thyroid/parathyroid:7.02 adrenal gland:7.14 pancreas:6.45 breast:6.86 salivary:6.62
CAGE uterus:1.57 placenta:1.27 prostate:1.59 ovary:1.50 testis:1.07 heart:1.63 muscle:0.79 esophagus:1.86 stomach:- intestine:2.57 colon:2.41     liver/hepato:1.66    lung:3.95 bladder:1.35 kidney:1.70 pituitary:0.56 thyroid/parathyroid:0.98 adrenal gland:- pancreas:1.74 breast:1.16 salivary:2.01
RNA-seq uterus:- placenta:- prostate:0.48 ovary:0.64 testis:0.18 heart:0.33 muscle:0.02 esophagus:- stomach:- intestine:- colon:0.16     liver/hepato:0.30        lung:1.93    bladder:- kidney:0.49 pituitary:- thyroid/parathyroid:0.12 adrenal gland:2.34 pancreas:- breast:0.78 salivary:-

Gene Information

IDs

Refseq ID NM_003123
Gene ID 6693
Unigene ID Hs.632188
Probe set ID 206056_x_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000197471
GTEx ID ENSG00000197471

Orthologous Gene

Mouse[2]  NM_001037810, NM_009259
Rat[2]  NM_001013868, NM_001025759

Chromosomal Region

16p11.2  [29,674,300  -  29,681,811]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

1301183
1683685
1731338
1827122
2023632
2241892
2521952
2784859
2950285
8554898
8858161
9472040
9603925
9616160
10490978
10753822
10899905
10908570
11238599
11773067
12045189
12411317
12477932
12499775
12626536
12820726
12902492
14676827
14719063
15003504
15187099
15280197
15449712
15489334
15522211
16269612
16344560
16751378
16757688
17891181
17979485
17996943
18227725
18586676
18678668
19946888
21045567
21060818
21372249
21768350
21905200
21947346
22075155
22171268
22466560
22576689
22613599
22790855
22830021
23015282
23400223
23536680
23617469
23867815

Gene Ontology  (GO ID)

Biological Process

GO:0007596  blood coagulation
GO:0007166  cell surface receptor linked signal transduction
GO:0006968  cellular defense response
GO:0006935  chemotaxis
GO:0042742  defense response to bacterium
GO:0007163  establishment or maintenance of cell polarity
GO:0006955  immune response
GO:0050900  leukocyte migration
GO:0007162  negative regulation of cell adhesion
GO:0042130  negative regulation of T cell proliferation
GO:0001808  negative regulation of type IV hypersensitivity
GO:0045060  negative thymic T cell selection
GO:0042102  positive regulation of T cell proliferation
GO:0042535  positive regulation of tumor necrosis factor biosynthetic process
GO:0050688  regulation of defense response to virus
GO:0001562  response to protozoan
GO:0007165  signal transduction
GO:0031295  T cell costimulation

Cellular Component

GO:0005604  basement membrane
GO:0009986  cell surface
GO:0009897  external side of plasma membrane
GO:0005615  extracellular space
GO:0005887  integral to plasma membrane
GO:0005886  plasma membrane
GO:0001931  uropod

Molecular Function

GO:0004888  transmembrane receptor activity