HLA-B associated transcript 2

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Synonym

HLA-B associated transcript 2, D6S51E, D6S51, BAT2, HLA-B-associated transcript 2, Large proline-rich protein BAT2, DKFZp686D09175

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:65.20 cerebellum:12.60 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:11.80 artery/aorta:- vein:- lymphnode:20.20 peripheral blood:18.20 spleen:94.50 thymus:12.90 bone marrow:- adipose:- bone:- skin:4.80
GeneChip cerebrum:6.88 cerebellum:6.89 brain stem:6.83 corpus callosum/glia:6.94 pineal gland:- peripheral nerve:6.37 spine:6.49 retina:- eye:- artery/aorta:6.55 vein:6.63 lymphnode:6.93 peripheral blood:- spleen:7.04 thymus:6.82 bone marrow:6.69 adipose:6.55 bone:- skin:6.41
CAGE cerebrum:4.84 cerebellum:- brain stem:4.63 corpus callosum/glia:4.80 pineal gland:5.12 peripheral nerve:- spine:4.59 retina:- eye:- artery/aorta:4.65 vein:4.56 lymphnode:4.43 peripheral blood:- spleen:4.49 thymus:4.99 bone marrow:- adipose:4.13 bone:- skin:-
RNA-seq cerebrum:0 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:9.10 placenta:- prostate:33.80 ovary:- testis:787.40 heart:38.30 muscle:- esophagus:- stomach:- intestine:- colon:-     liver/hepato:-        lung:14.70    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-
GeneChip uterus:6.75 placenta:6.13 prostate:6.68 ovary:6.85 testis:7.89 heart:6.65 muscle:6.66 esophagus:6.76 stomach:6.85 intestine:6.68 colon:6.77 liver/hepato:6.76 lung:6.70 bladder:- kidney:6.83 pituitary:6.88 thyroid/parathyroid:6.91 adrenal gland:7 pancreas:6.84 breast:6.76 salivary:6.63
CAGE uterus:4.59 placenta:4.02 prostate:4.51 ovary:4.84 testis:5.59 heart:4.47 muscle:4.34 esophagus:4.41 stomach:- intestine:4.02 colon:4.29     liver/hepato:4.03    lung:4.18 bladder:4.42 kidney:4.20 pituitary:4.60 thyroid/parathyroid:4.30 adrenal gland:- pancreas:4.14 breast:4.20 salivary:3.93
RNA-seq uterus:- placenta:- prostate:0 ovary:0 testis:0 heart:0 muscle:0 esophagus:- stomach:- intestine:- colon:0     liver/hepato:0        lung:0    bladder:- kidney:0 pituitary:- thyroid/parathyroid:0 adrenal gland:0 pancreas:- breast:0 salivary:-

Gene Information

IDs

Refseq ID NM_080686
Gene ID 7916
Unigene ID Hs.123239
Probe set ID 214201_x_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000204469
GTEx ID ENSG00000204469

Orthologous Gene

Mouse[2]  NM_001199044, NM_020027
Rat [0]  

Chromosomal Region

HSCHR6_MHC_COX  [31,575,863  -  31,592,960]
6p21.33  [31,588,450  -  31,605,548]
HSCHR6_MHC_MANN  [31,627,937  -  31,645,035]
HSCHR6_MHC_SSTO  [31,578,395  -  31,595,492]
HSCHR6_MHC_QBL  [31,578,694  -  31,595,788]
HSCHR6_MHC_MCF  [31,664,743  -  31,681,839]
HSCHR6_MHC_DBB  [31,570,625  -  31,587,723]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

2156268
2813433
8499947
8889548
10949724
10987645
11556964
12477932
14574404
14656967
14667819
15077289
15302935
15489334
15752841
15842729
16083285
16116311
16713569
16751776
16964243
17081983
17827388
17975119
18835879
19023099
19039607
19056867
19115949
19116923
19143821
19531213
19615732
19851445
19946888
20020773
20098615
20195357
20205591
20587610
20616199
20626023
21139048
21145461
21903422
21906983
21988832
22267201
22586326
23047821
23079975
23121087
23221128
23307926
23894747
24132900
24332808
24457600
24550385
24639526
24811749
24816145

Gene Ontology  (GO ID)

Cellular Component

GO:0005737  cytoplasm
GO:0005634  nucleus

Molecular Function

GO:0005515  protein binding