Nanog homeobox

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Synonym

NANOG, FLJ40451, FLJ12581, Nanog homeobox

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:1.20

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:-

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:-

bone:-

skin:4.80

GeneChip

cerebrum:4.81

cerebellum:4.73

brain stem:4.53

corpus callosum/glia:4.76

pineal gland:-

peripheral nerve:4.82

spine:4.78

retina:-

eye:-

artery/aorta:4.60

vein:4.55

lymphnode:4.49

peripheral blood:-

spleen:4.72

thymus:4.26

bone marrow:4.62

adipose:4.68

bone:-

skin:4.68

CAGE

cerebrum:0

cerebellum:-

brain stem:0

corpus callosum/glia:0

pineal gland:0

peripheral nerve:-

spine:0

retina:-

eye:-

artery/aorta:0

vein:0

lymphnode:0

peripheral blood:-

spleen:0

thymus:0

bone marrow:-

adipose:0

bone:-

skin:-

RNA-seq

cerebrum:0.09

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:0.13

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:0.04

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:-

placenta:-

prostate:-

ovary:-

testis:4.30

heart:-

muscle:-

esophagus:-

stomach:-

intestine:-

colon:-

liver/hepato:-

lung:-

bladder:-

kidney:-

pituitary:-

thyroid/parathyroid:-

adrenal gland:-

pancreas:-

breast:-

salivary:-

GeneChip

uterus:5.16

placenta:4.42

prostate:5.11

ovary:4.92

testis:5.68

heart:4.59

muscle:4.74

esophagus:4.34

stomach:4.64

intestine:4.51

colon:4.48

liver/hepato:4.87

lung:4.54

bladder:-

kidney:4.90

pituitary:5.69

thyroid/parathyroid:5.36

adrenal gland:4.74

pancreas:4.43

breast:5.31

salivary:4.63

CAGE

uterus:0

placenta:0

prostate:0

ovary:0

testis:0

heart:0

muscle:0

esophagus:0

stomach:-

intestine:0

colon:0

liver/hepato:0

lung:0

bladder:0

kidney:0

pituitary:0

thyroid/parathyroid:0

adrenal gland:-

pancreas:0

breast:0

salivary:0

RNA-seq

uterus:-

placenta:-

prostate:0.03

ovary:0.08

testis:0.34

heart:0.06

muscle:0

esophagus:-

stomach:-

intestine:-

colon:0.06

liver/hepato:0

lung:0.02

bladder:-

kidney:0.05

pituitary:-

thyroid/parathyroid:0.02

adrenal gland:0.02

pancreas:-

breast:0.05

salivary:-

IDs

Refseq ID	NM_024865
Gene ID	79923
Unigene ID	Hs.635882
Probe set ID	220184_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000111704
GTEx ID	ENSG00000111704

Orthologous Gene

Mouse[3]	NM_001080945, NM_028016
Rat [0]

Chromosomal Region

12p13.31 [7,940,390 - 7,948,655]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

IPR001356	Homeobox
IPR009057	Homeodomain-like
IPR012287	Homeodomain-related

Gene Ontology (GO ID)

Biological Process

GO:0030154	cell differentiation
GO:0008283	cell proliferation
GO:0009790	embryonic development
GO:0009880	embryonic pattern specification
GO:0001714	endodermal cell fate specification
GO:0008406	gonad development
GO:0001710	mesodermal cell fate commitment
GO:0030514	negative regulation of BMP signaling pathway
GO:0010454	negative regulation of cell fate commitment
GO:0000122	negative regulation of transcription from RNA polymerase II promoter
GO:0008284	positive regulation of cell proliferation
GO:0045931	positive regulation of mitotic cell cycle
GO:0045944	positive regulation of transcription from RNA polymerase II promoter
GO:0045595	regulation of cell differentiation
GO:0010468	regulation of gene expression
GO:0006355	regulation of transcription, DNA-dependent
GO:0032526	response to retinoic acid
GO:0035019	somatic stem cell maintenance
GO:0017145	stem cell division
GO:0006351	transcription, DNA-dependent

Cellular Component

GO:0005730	nucleolus
GO:0005654	nucleoplasm
GO:0005634	nucleus

Molecular Function

GO:0003682	chromatin binding
GO:0003677	DNA binding
GO:0003714	transcription corepressor activity
GO:0003700	transcription factor activity

Nanog homeobox

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function