collagen, type XXVII, alpha 1

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Synonym

KIAA1870, FLJ11895, COL27A1, collagen, type XXVII, alpha 1, MGC11337, RP11-82I1.1

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:16.60 cerebellum:50.40 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:122.70 spine:112.30 retina:355.90 eye:29.40 artery/aorta:- vein:66.60 lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:51.20 skin:19.20
GeneChip nodata
CAGE cerebrum:2.07 cerebellum:- brain stem:2.30 corpus callosum/glia:1.76 pineal gland:1.60 peripheral nerve:- spine:2.69 retina:- eye:- artery/aorta:3.34 vein:2.66 lymphnode:1.90 peripheral blood:- spleen:1.12 thymus:1.62 bone marrow:- adipose:2.15 bone:- skin:-
RNA-seq cerebrum:0.21 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:1.59 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0.32 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:45.60 placenta:18.20 prostate:78.90 ovary:149.10 testis:26 heart:51.10 muscle:- esophagus:- stomach:- intestine:- colon:17     liver/hepato:-        lung:44    bladder:- kidney:20.80 pituitary:- thyroid/parathyroid:163.70 adrenal gland:50.80 pancreas:53.30 breast:27.90 salivary:-
GeneChip nodata
CAGE uterus:4.11 placenta:2.19 prostate:2.22 ovary:3.13 testis:1.52 heart:2.03 muscle:1.58 esophagus:1.86 stomach:- intestine:1.95 colon:1.96     liver/hepato:2.08    lung:2.07 bladder:2.43 kidney:2.71 pituitary:1.30 thyroid/parathyroid:2.12 adrenal gland:- pancreas:3.02 breast:2.11 salivary:0.83
RNA-seq uterus:- placenta:- prostate:0.82 ovary:2.03 testis:0.59 heart:0.62 muscle:0.15 esophagus:- stomach:- intestine:- colon:0.71     liver/hepato:1.01        lung:0.60    bladder:- kidney:1.48 pituitary:- thyroid/parathyroid:1.74 adrenal gland:2.04 pancreas:- breast:0.51 salivary:-

Gene Information

IDs

Refseq ID NM_032888
Gene ID 85301
Unigene ID Hs.494892
Probe set ID -
Ensembl ID ENSG00000196739
GTEx ID ENSG00000196739

Orthologous Gene

Mouse[1]  NM_025685
Rat[1]  NM_198747

Chromosomal Region

9q32  [116,917,840  -  117,074,791]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

11347906
12477932
12714037
12766169
14702039
15922909
18391951
18978678
20379614
20467438
22889924
23192621

Gene Ontology  (GO ID)

Biological Process

GO:0030198  extracellular matrix organization

Cellular Component

GO:0005788  endoplasmic reticulum lumen
GO:0005576  extracellular region
GO:0005583  fibrillar collagen

Molecular Function

GO:0005201  extracellular matrix structural constituent
GO:0046872  metal ion binding