RCD1 required for cell differentiation1 homolog (S. pombe)

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Synonym

RQCD1, CNOT9, RCD1, RCD1+

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:16.60 cerebellum:25.20 brain stem:- corpus callosum/glia:29.20 pineal gland:- peripheral nerve:- spine:- retina:- eye:52.90 artery/aorta:60 vein:- lymphnode:111.20 peripheral blood:- spleen:37.80 thymus:- bone marrow:- adipose:- bone:12.80 skin:62.40
GeneChip cerebrum:5.17 cerebellum:5.06 brain stem:5.39 corpus callosum/glia:4.98 pineal gland:- peripheral nerve:4.93 spine:5.03 retina:- eye:- artery/aorta:5.33 vein:5.12 lymphnode:5.15 peripheral blood:- spleen:5.09 thymus:5.72 bone marrow:5.29 adipose:5.08 bone:- skin:5.25
CAGE cerebrum:3.77 cerebellum:- brain stem:3.66 corpus callosum/glia:4.02 pineal gland:4.06 peripheral nerve:- spine:3.61 retina:- eye:- artery/aorta:3.70 vein:3.55 lymphnode:3.88 peripheral blood:- spleen:3.93 thymus:4.23 bone marrow:- adipose:3.84 bone:- skin:-
RNA-seq cerebrum:3.14 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:3.68 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:3.36 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:18.20 placenta:36.40 prostate:- ovary:- testis:47.60 heart:63.90 muscle:- esophagus:- stomach:42.50 intestine:32.40 colon:42.40     liver/hepato:31.70        lung:63.50    bladder:125.60 kidney:52 pituitary:116 thyroid/parathyroid:163.70 adrenal gland:50.80 pancreas:- breast:148.70 salivary:-
GeneChip uterus:5.21 placenta:4.95 prostate:5.51 ovary:5.09 testis:5.79 heart:5.09 muscle:5.34 esophagus:5.32 stomach:4.97 intestine:5.15 colon:5.13 liver/hepato:4.92 lung:4.99 bladder:- kidney:4.96 pituitary:5.26 thyroid/parathyroid:4.96 adrenal gland:5.22 pancreas:5.77 breast:4.94 salivary:5.14
CAGE uterus:3.91 placenta:3.74 prostate:3.53 ovary:3.63 testis:4.14 heart:3.42 muscle:3.55 esophagus:3.63 stomach:- intestine:3.46 colon:3.67     liver/hepato:3.70    lung:3.52 bladder:3.67 kidney:3.24 pituitary:4.33 thyroid/parathyroid:3.29 adrenal gland:- pancreas:3.50 breast:2.87 salivary:3.74
RNA-seq uterus:- placenta:- prostate:3.40 ovary:3.92 testis:4.09 heart:2.96 muscle:2.95 esophagus:- stomach:- intestine:- colon:2.82     liver/hepato:3.07        lung:3.47    bladder:- kidney:3.02 pituitary:- thyroid/parathyroid:3.55 adrenal gland:3.87 pancreas:- breast:3.00 salivary:-

Gene Information

IDs

Refseq ID NM_005444
Gene ID 9125
Unigene ID Hs.148767
Probe set ID 213098_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000144580
GTEx ID ENSG00000144580

Orthologous Gene

Mouse[1]  NM_021383
Rat[1]  NM_001009357

Chromosomal Region

2q35  [219,433,303  -  219,461,803]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

9447985
12356739
12477932
15209511
16778766
17452450
17643375
18180299
18377426
19322201
19558367
19724902
19946888
20360068
20878056
21139048
21890473
22939629
23383273
24816145

Gene Ontology  (GO ID)

Biological Process

GO:0019221  cytokine-mediated signaling pathway
GO:0010467  gene expression
GO:0031047  gene silencing by RNA
GO:0016071  mRNA metabolic process
GO:0033147  negative regulation of estrogen receptor signaling pathway
GO:0000288  nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289  nuclear-transcribed mRNA poly(A) tail shortening
GO:0006355  regulation of transcription, DNA-dependent
GO:0006417  regulation of translation
GO:0016070  RNA metabolic process
GO:0007548  sex differentiation
GO:0006351  transcription, DNA-dependent

Cellular Component

GO:0030014  CCR4-NOT complex
GO:0000932  cytoplasmic mRNA processing body
GO:0005829  cytosol
GO:0005634  nucleus

Molecular Function

GO:0005515  protein binding