SET and MYND domain containing 1

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Synonym

SET and MYND domain containing 1, Zinc-finger protein BOP, CD8b-opposite, C78565, Zmynd18, Smyd1, SET and MYND domain-containing protein 1, m-BOP, Bop, 4632404M21Rik

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST nodata
GeneChip cerebrum:4.60 cerebellum:4.51 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:4.42 spine:5.51 retina:4.67 eye:4.74 artery/aorta:- vein:4.91 lymphnode:4.21 peripheral blood:- spleen:4.40 thymus:- bone marrow:4.26 adipose:6.01 bone:4.88 skin:5.66
CAGE cerebrum:0 cerebellum:- brain stem:0 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:1.42 retina:- eye:- artery/aorta:1.36 vein:- lymphnode:0.42 peripheral blood:- spleen:0 thymus:1.35 bone marrow:- adipose:- bone:3.99 skin:3.38
RNA-seq cerebrum:11.18 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST nodata
GeneChip uterus:4.24 placenta:4.53 prostate:5.43 ovary:4.18 testis:5.53 heart:10.05 muscle:11.26 esophagus:- stomach:4.36 intestine:4.42 colon:- liver/hepato:4.85 lung:4.82 bladder:4.46 kidney:4.77 pituitary:4.43 thyroid/parathyroid:- adrenal gland:4.29 pancreas:4.55 breast:7.34 salivary:4.59
CAGE uterus:0 placenta:0 prostate:1.69 ovary:0.13 testis:0 heart:- muscle:- esophagus:- stomach:1.57 intestine:0 colon:0     liver/hepato:0    lung:1.66 bladder:0.33 kidney:- pituitary:0 thyroid/parathyroid:- adrenal gland:0.14 pancreas:0 breast:0.94 salivary:-
RNA-seq uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:61.16 esophagus:- stomach:- intestine:- colon:-     liver/hepato:1.67        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-

Gene Information

IDs

Refseq ID NM_001160127
Gene ID 12180
Unigene ID -
Probe set ID 1450203_at  [Mouse430_2]
Ensembl ID ENSMUSG00000055027

Orthologous Gene

Human[1]  NM_198274
Rat[1]  NM_001106595

Chromosomal Region

6C1  [71,163,934  -  71,272,227]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

7590968
9013956
10349636
10725249
10922068
11042159
11076861
11217851
11489994
11923873
12011100
12466851
12477932
12858532
14610273
15890826
16141072
16141073
16477022
16638982
16805913
17875930
18424556
18799693
19162039
19620969
20059953
20305823
20943667
21071677
21267068
21382375
22147266
24105743

Gene Ontology  (GO ID)

Biological Process

GO:0006338  chromatin remodeling
GO:0007507  heart development
GO:0032259  methylation
GO:0045892  negative regulation of transcription, DNA-dependent
GO:0045663  positive regulation of myoblast differentiation
GO:0010831  positive regulation of myotube differentiation
GO:0006355  regulation of transcription, DNA-dependent
GO:0006351  transcription, DNA-dependent

Cellular Component

GO:0005737  cytoplasm
GO:0005634  nucleus

Molecular Function

GO:0003677  DNA binding
GO:0018024  histone-lysine N-methyltransferase activity
GO:0046872  metal ion binding
GO:0008168  methyltransferase activity
GO:0005515  protein binding
GO:0003714  transcription corepressor activity
GO:0016740  transferase activity