U1 small nuclear ribonucleoprotein C

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Synonym

Snrpc, Snrp1c, U1C protein, U1-C, U1 snRNP protein C, U1 small nuclear ribonucleoprotein C

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:10.40 cerebellum:- brain stem:31.80 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:47.30 retina:32.10 eye:- artery/aorta:- vein:- lymphnode:21.60 peripheral blood:28.80 spleen:- thymus:19.80 bone marrow:- adipose:- bone:12.50 skin:23.80
GeneChip cerebrum:9.41 cerebellum:9.62 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:9.54 spine:9.33 retina:8.96 eye:9 artery/aorta:- vein:9.86 lymphnode:9.93 peripheral blood:- spleen:9.79 thymus:- bone marrow:10.37 adipose:9.76 bone:10.12 skin:9.21
CAGE cerebrum:1.97 cerebellum:- brain stem:2.12 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:2.06 retina:- eye:- artery/aorta:1.46 vein:- lymphnode:1.28 peripheral blood:- spleen:2.29 thymus:2.49 bone marrow:- adipose:- bone:1.84 skin:1.60
RNA-seq cerebrum:10.45 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:27.60 prostate:- ovary:- testis:7.40 heart:37.20 muscle:- esophagus:- stomach:- intestine:- colon:-     liver/hepato:9.10        lung:-    bladder:- kidney:24.20 pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:75.10 breast:13.10 salivary:-
GeneChip uterus:9.86 placenta:9.82 prostate:9.33 ovary:9.87 testis:10.95 heart:9.52 muscle:10.20 esophagus:- stomach:9.44 intestine:9.69 colon:- liver/hepato:9.52 lung:9.30 bladder:9.39 kidney:9.13 pituitary:9.41 thyroid/parathyroid:- adrenal gland:8.98 pancreas:9.03 breast:9.83 salivary:9.20
CAGE uterus:2.24 placenta:2.81 prostate:1.87 ovary:1.81 testis:4.50 heart:- muscle:- esophagus:- stomach:2.26 intestine:1.92 colon:2.10     liver/hepato:1.64    lung:1.69 bladder:1.80 kidney:- pituitary:1.81 thyroid/parathyroid:- adrenal gland:1.58 pancreas:0.84 breast:1.24 salivary:-
RNA-seq uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:19.51 esophagus:- stomach:- intestine:- colon:-     liver/hepato:7.35        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-

Gene Information

IDs

Refseq ID NM_011432
Gene ID 20630
Unigene ID Mm.103949
Probe set ID 1416197_at  [Mouse430_2]
Ensembl ID ENSMUSG00000024217

Orthologous Gene

Human[1]  NM_003093
Rat[1]  NM_003093

Chromosomal Region

-

Gene Family (Interpro ID)

IPR000690  Zinc finger, C2H2-type matrin
IPR003604  Zinc finger, U1-type

Link to Pubmed  (Pubmed ID)

8889548
9031639
9094092
9724750
10349636
10922068
11042159
11076861
11217851
12466851
12477932
14610273
15489334
16141072
16141073
17218272
18799693
21267068
22083953

Gene Ontology  (GO ID)

Biological Process

GO:0000398  nuclear mRNA splicing, via spliceosome
GO:0000387  spliceosomal snRNP assembly

Cellular Component

GO:0015030  Cajal body
GO:0005634  nucleus
GO:0030529  ribonucleoprotein complex
GO:0005685  U1 snRNP
GO:0019012  virion

Molecular Function

GO:0046872  metal ion binding
GO:0003676  nucleic acid binding
GO:0042803  protein homodimerization activity
GO:0003723  RNA binding
GO:0003727  single-stranded RNA binding
GO:0008270  zinc ion binding