small nuclear ribonucleoprotein B

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Synonym

SMB, Sm protein B, SNRNP-B, small nuclear ribonucleoprotein B, SmB, snRNP-B, SM-B, Sm-B, SM11, Snrpb, AU018828

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST nodata
GeneChip cerebrum:9.43 cerebellum:10.17 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:9.48 spine:9.33 retina:8.89 eye:8.99 artery/aorta:- vein:9.99 lymphnode:10.76 peripheral blood:- spleen:10.84 thymus:- bone marrow:10.73 adipose:10.14 bone:10.41 skin:9.62
CAGE cerebrum:3.71 cerebellum:- brain stem:3.69 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:3.49 retina:- eye:- artery/aorta:3.76 vein:- lymphnode:3.63 peripheral blood:- spleen:4.56 thymus:4.41 bone marrow:- adipose:- bone:4.83 skin:3.78
RNA-seq cerebrum:35.95 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST nodata
GeneChip uterus:10.60 placenta:9.71 prostate:10.08 ovary:10.45 testis:9.69 heart:9.92 muscle:10.59 esophagus:- stomach:10.06 intestine:10.19 colon:- liver/hepato:9.60 lung:10.43 bladder:10.20 kidney:10 pituitary:9.46 thyroid/parathyroid:- adrenal gland:8.94 pancreas:8.33 breast:10.43 salivary:9.01
CAGE uterus:4.14 placenta:4.21 prostate:3.86 ovary:4.05 testis:4.58 heart:- muscle:- esophagus:- stomach:4.07 intestine:4.21 colon:3.90     liver/hepato:4.16    lung:4.18 bladder:4.04 kidney:- pituitary:4.07 thyroid/parathyroid:- adrenal gland:4.08 pancreas:3.94 breast:4.10 salivary:-
RNA-seq uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:28.38 esophagus:- stomach:- intestine:- colon:-     liver/hepato:14.16        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-

Gene Information

IDs

Refseq ID NM_009225
Gene ID 20638
Unigene ID -
Probe set ID 1419260_a_at  [Mouse430_2]
Ensembl ID ENSMUSG00000027404

Orthologous Gene

Human[3]  NM_003091, NM_198216
Rat[1]  NM_134358, NM_198216

Chromosomal Region

-

Gene Family (Interpro ID)

IPR001163  Like-Sm ribonucleoprotein (LSM) domain
IPR006649  Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type
IPR017131  Small ribonucleoprotein associated, SmB/SmN

Link to Pubmed  (Pubmed ID)

1376292
7671812
7680326
7744014
9724750
10349636
10556313
10725249
10922068
11042159
11076861
11217851
12466851
12520002
15369763
15782199
16141072
16141073
16236758
16602821
17218272
19470752
20059953
21677750

Gene Ontology  (GO ID)

Biological Process

GO:0006397  mRNA processing
GO:0008380  RNA splicing

Cellular Component

GO:0071013  catalytic step 2 spliceosome
GO:0005737  cytoplasm
GO:0071204  histone pre-mRNA 3'end processing complex
GO:0005634  nucleus
GO:0030529  ribonucleoprotein complex
GO:0005681  spliceosomal complex
GO:0005689  U12-type spliceosomal complex
GO:0005683  U7 snRNP

Molecular Function

GO:0071208  histone pre-mRNA DCP binding
GO:0005515  protein binding
GO:0003723  RNA binding