TRAF type zinc finger domain containing 1

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Synonym

Trafd1, Fln29, TRAF type zinc finger domain containing 1, 1110008K06Rik

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:- cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:38.20 spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:10.80 peripheral blood:14.40 spleen:39.50 thymus:- bone marrow:38.50 adipose:- bone:- skin:-
GeneChip cerebrum:8.50 cerebellum:8.58 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:8.09 spine:7.83 retina:9.95 eye:9.44 artery/aorta:- vein:8.67 lymphnode:9.68 peripheral blood:- spleen:9.54 thymus:- bone marrow:8.84 adipose:8.62 bone:8.76 skin:8.60
CAGE cerebrum:3.08 cerebellum:- brain stem:2.59 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:2.60 retina:- eye:- artery/aorta:3.29 vein:- lymphnode:3.49 peripheral blood:- spleen:3.28 thymus:2.68 bone marrow:- adipose:- bone:3.49 skin:3.14
RNA-seq cerebrum:7.98 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:- esophagus:- stomach:- intestine:- colon:-     liver/hepato:-        lung:40.20    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:26.10 salivary:-
GeneChip uterus:9.34 placenta:8.30 prostate:9.64 ovary:8.53 testis:11.11 heart:8.70 muscle:8.52 esophagus:- stomach:8.25 intestine:8.78 colon:- liver/hepato:8.68 lung:8.92 bladder:8.45 kidney:7.76 pituitary:9.16 thyroid/parathyroid:- adrenal gland:8.59 pancreas:7.68 breast:9.03 salivary:8.80
CAGE uterus:3.10 placenta:2.73 prostate:4.29 ovary:2.74 testis:6.04 heart:- muscle:- esophagus:- stomach:2.90 intestine:3.57 colon:3.76     liver/hepato:3.22    lung:3.38 bladder:3.24 kidney:- pituitary:3.48 thyroid/parathyroid:- adrenal gland:2.97 pancreas:2.19 breast:3.02 salivary:-
RNA-seq uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:7.28 esophagus:- stomach:- intestine:- colon:-     liver/hepato:6.65        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-

Gene Information

IDs

Refseq ID NM_172275
Gene ID 231712
Unigene ID Mm.204887
Probe set ID 1428346_at  [Mouse430_2]
Ensembl ID ENSMUSG00000042726

Orthologous Gene

Human[4]  NM_001143906, NM_006700
Rat[1]  NM_053760, NM_006700

Chromosomal Region

5F  [121,821,734  -  121,835,641]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

8889548
10349636
10922068
11042159
11076861
11217851
12466851
12477932
15226823
15489334
15782199
16141072
16141073
16221674
18799693
18849341
21677750

Gene Ontology  (GO ID)

Biological Process

GO:0045824  negative regulation of innate immune response

Cellular Component

GO:0005575  cellular_component

Molecular Function

GO:0046872  metal ion binding
GO:0005515  protein binding
GO:0008270  zinc ion binding