collagen, type XXVII, alpha 1

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Synonym

mKIAA1870, 5730512J02Rik, Col27a1, AI449266, procollagen, type XXVII, alpha 1

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:10.40 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:76.40 spine:- retina:- eye:7.60 artery/aorta:- vein:- lymphnode:43.20 peripheral blood:- spleen:39.50 thymus:29.60 bone marrow:- adipose:- bone:12.50 skin:31.70
GeneChip nodata
CAGE cerebrum:1.61 cerebellum:- brain stem:1.41 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:1.66 retina:- eye:- artery/aorta:3.08 vein:- lymphnode:0.83 peripheral blood:- spleen:0.62 thymus:1.17 bone marrow:- adipose:- bone:1.84 skin:0.84
RNA-seq cerebrum:1.24 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:- prostate:- ovary:- testis:36.90 heart:- muscle:- esophagus:- stomach:32.70 intestine:- colon:17.60     liver/hepato:27.20        lung:10    bladder:- kidney:16.10 pituitary:25.80 thyroid/parathyroid:- adrenal gland:- pancreas:28.10 breast:6.50 salivary:-
GeneChip nodata
CAGE uterus:2.30 placenta:1.17 prostate:1.46 ovary:2.32 testis:0.75 heart:- muscle:- esophagus:- stomach:1.91 intestine:1.05 colon:1.19     liver/hepato:3.05    lung:2.08 bladder:1.89 kidney:- pituitary:1.75 thyroid/parathyroid:- adrenal gland:0.97 pancreas:2.03 breast:1.59 salivary:-
RNA-seq uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:0.82 esophagus:- stomach:- intestine:- colon:-     liver/hepato:1.54        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-

Gene Information

IDs

Refseq ID NM_025685
Gene ID 373864
Unigene ID Mm.194116
Probe set ID -
Ensembl ID ENSMUSG00000045672

Orthologous Gene

Human[1]  NM_032888
Rat[1]  NM_198747

Chromosomal Region

4B3  [62,875,038  -  62,996,025]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

10349636
11042159
11076861
11217851
12466851
12477932
12714037
12766169
15368895
16141072
16141073
17331945
19414009
19884258
21267068
21677750
22206015

Gene Ontology  (GO ID)

Biological Process

GO:0008150  biological_process

Cellular Component

GO:0005581  collagen
GO:0005576  extracellular region
GO:0005583  fibrillar collagen
GO:0005578  proteinaceous extracellular matrix

Molecular Function

GO:0005201  extracellular matrix structural constituent
GO:0046872  metal ion binding
GO:0003674  molecular_function