collagen, type XXVII, alpha 1

 jump to detail

Synonym

-

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:107.70 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:142.20 artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:78 thymus:- bone marrow:- adipose:- bone:1210.50 skin:-
GeneChip nodata
CAGE nodata
RNA-seq nodata
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:- prostate:- ovary:- testis:- heart:38.80 muscle:- esophagus:- stomach:- intestine:- colon:-     liver/hepato:-        lung:-    bladder:- kidney:63.80 pituitary:355.30 thyroid/parathyroid:- adrenal gland:- pancreas:1251.80 breast:- salivary:-
GeneChip nodata
CAGE nodata
RNA-seq nodata

Gene Information

IDs

Refseq ID NM_198747
Gene ID 298101
Unigene ID Rn.53800
Probe set ID -
Ensembl ID ENSRNOG00000007657

Orthologous Gene

Human[1]  NM_032888
Mouse[1]  NM_025685

Chromosomal Region

5q24  [80,198,078  -  80,316,354]

Gene Family (Interpro ID)

IPR008985  Concanavalin A-like lectin/glucanase
IPR013320  Concanavalin A-like lectin/glucanase, subgroup
IPR001791  Laminin G
IPR012680  Laminin G, subdomain 2

Link to Pubmed  (Pubmed ID)

12714037

Gene Ontology  (GO ID)

Cellular Component

GO:0005583  fibrillar collagen

Molecular Function

GO:0005201  extracellular matrix structural constituent
GO:0046872  metal ion binding