chromobox homolog 5 (HP1 alpha homolog, Drosophila)

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Synonym

-

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST nodata
GeneChip cerebrum:6.13 cerebellum:5.78 brain stem:6.37 corpus callosum/glia:- pineal gland:- peripheral nerve:6.34 spine:- retina:- eye:5.91 artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:5.70 thymus:6.76 bone marrow:5.79 adipose:- bone:- skin:-
CAGE nodata
RNA-seq nodata
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST nodata
GeneChip uterus:- placenta:- prostate:- ovary:- testis:- heart:5.73 muscle:5.51 esophagus:- stomach:- intestine:5.47 colon:5.76 liver/hepato:- lung:- bladder:- kidney:5.62 pituitary:7.31 thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-
CAGE nodata
RNA-seq nodata

Gene Information

IDs

Refseq ID NM_001106797
Gene ID 300266
Unigene ID -
Probe set ID rc_AA893788_at  [RG_U34A]
Ensembl ID ENSRNOG00000036841

Orthologous Gene

Human[6]  NM_001127321, NM_001127322, NM_012117
Mouse[12]  NM_001076789, NM_001110216, NM_007626

Chromosomal Region

7q36  [142,107,923  -  142,125,543]

Gene Family (Interpro ID)

IPR000953  Chromo domain
IPR017984  Chromo domain subgroup
IPR016197  Chromo domain-like
IPR008251  Chromo shadow
IPR018125  Chromo shadow, subgroup

Link to Pubmed  (Pubmed ID)

12477932

Gene Ontology  (GO ID)

Biological Process

GO:0045892  negative regulation of transcription, DNA-dependent

Cellular Component

GO:0010369  chromocenter
GO:0005737  cytoplasm
GO:0000792  heterochromatin
GO:0000118  histone deacetylase complex
GO:0035097  histone methyltransferase complex
GO:0000776  kinetochore
GO:0005720  nuclear heterochromatin
GO:0005730  nucleolus
GO:0005634  nucleus
GO:0016605  PML body
GO:0017053  transcriptional repressor complex

Molecular Function

GO:0003682  chromatin binding
GO:0019899  enzyme binding
GO:0042826  histone deacetylase binding
GO:0035064  methylated histone residue binding
GO:0030674  protein binding, bridging
GO:0042803  protein homodimerization activity
GO:0070491  transcription repressor binding