SRY (sex determining region Y)-box 18

 jump to detail

Synonym

-

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:23.90 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:78 thymus:- bone marrow:- adipose:147.20 bone:- skin:-
GeneChip nodata
CAGE nodata
RNA-seq nodata
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:39.80 prostate:38 ovary:114.10 testis:- heart:38.80 muscle:- esophagus:- stomach:- intestine:- colon:-     liver/hepato:-        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:113.80 breast:- salivary:-
GeneChip nodata
CAGE nodata
RNA-seq nodata

Gene Information

IDs

Refseq ID NM_001024781
Gene ID 311723
Unigene ID Rn.22446
Probe set ID -
Ensembl ID ENSRNOG00000016248

Orthologous Gene

Human[1]  NM_018419
Mouse[1]  NM_009236

Chromosomal Region

3q43  [170,820,462  -  170,822,262]

Gene Family (Interpro ID)

IPR000910  High mobility group, HMG1/HMG2
IPR000135  High mobility group, HMG1/HMG2, subgroup
IPR009071  High mobility group, superfamily

Link to Pubmed  (Pubmed ID)

12477932
12740761

Gene Ontology  (GO ID)

Biological Process

GO:0001525  angiogenesis
GO:0008150  biological_process
GO:0001568  blood vessel development
GO:0043534  blood vessel endothelial cell migration
GO:0048469  cell maturation
GO:0035050  embryonic heart tube development
GO:0060956  endocardial cell differentiation
GO:0060214  endocardium formation
GO:0022405  hair cycle process
GO:0001942  hair follicle development
GO:0007507  heart development
GO:0001701  in utero embryonic development
GO:0001945  lymph vessel development
GO:0001946  lymphangiogenesis
GO:0060836  lymphatic endothelial cell differentiation
GO:0042789  mRNA transcription from RNA polymerase II promoter
GO:0000122  negative regulation of transcription from RNA polymerase II promoter
GO:0045892  negative regulation of transcription, DNA-dependent
GO:0045944  positive regulation of transcription from RNA polymerase II promoter
GO:0045893  positive regulation of transcription, DNA-dependent
GO:0006355  regulation of transcription, DNA-dependent
GO:0048866  stem cell fate specification
GO:0001944  vasculature development
GO:0001570  vasculogenesis

Cellular Component

GO:0005575  cellular_component
GO:0000790  nuclear chromatin
GO:0005634  nucleus

Molecular Function

GO:0003677  DNA binding
GO:0044212  DNA regulatory region binding
GO:0003674  molecular_function
GO:0043565  sequence-specific DNA binding
GO:0003700  transcription factor activity