high-mobility group 20B

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Synonym

high-mobility group 20B, SMARCE1r, HMG20B, Structural DNA-binding protein BRAF35, pp8857, PP7706, SOXL, HMG domain protein HMG20B, FLJ26127, BRAF35, SMARCE1-related protein, SMARCE1R, Sox-like transcriptional factor, BRCA2-associated factor 35, BRAF25, HMGX2

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:9.50 cerebellum:37.80 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:293.80 artery/aorta:- vein:66.60 lymphnode:30.30 peripheral blood:54.70 spleen:56.70 thymus:25.80 bone marrow:- adipose:40.30 bone:12.80 skin:57.60
GeneChip cerebrum:5.17 cerebellum:3.96 brain stem:5.49 corpus callosum/glia:6.13 pineal gland:- peripheral nerve:6.49 spine:5.84 retina:- eye:- artery/aorta:7.15 vein:7.17 lymphnode:6.90 peripheral blood:- spleen:6.77 thymus:7.88 bone marrow:6.41 adipose:6.91 bone:- skin:7.20
CAGE cerebrum:2.51 cerebellum:- brain stem:3.06 corpus callosum/glia:3.18 pineal gland:2.26 peripheral nerve:- spine:2.91 retina:- eye:- artery/aorta:3.42 vein:3.30 lymphnode:3.13 peripheral blood:- spleen:3.01 thymus:3.87 bone marrow:- adipose:3.15 bone:- skin:-
RNA-seq cerebrum:2.45 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:4.33 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:4.39 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:54.70 placenta:14.60 prostate:56.30 ovary:- testis:34.60 heart:25.50 muscle:20.10 esophagus:- stomach:21.20 intestine:32.40 colon:25.40     liver/hepato:52.80        lung:132    bladder:- kidney:104 pituitary:116 thyroid/parathyroid:- adrenal gland:- pancreas:71.10 breast:74.30 salivary:-
GeneChip uterus:7.11 placenta:8.14 prostate:8.20 ovary:6.64 testis:7.13 heart:5.93 muscle:4.84 esophagus:6.89 stomach:7.12 intestine:6.50 colon:7.11 liver/hepato:6.69 lung:6.54 bladder:- kidney:7.26 pituitary:5.42 thyroid/parathyroid:7.11 adrenal gland:6.75 pancreas:4.61 breast:7.70 salivary:7.55
CAGE uterus:3.53 placenta:3.74 prostate:3.63 ovary:3.18 testis:3.34 heart:2.95 muscle:2.43 esophagus:3.48 stomach:- intestine:3.20 colon:3.63     liver/hepato:3.08    lung:3.18 bladder:3.14 kidney:3.34 pituitary:2.69 thyroid/parathyroid:3.54 adrenal gland:- pancreas:3.23 breast:2.95 salivary:3.90
RNA-seq uterus:- placenta:- prostate:4.68 ovary:4.32 testis:4.50 heart:2.78 muscle:2.67 esophagus:- stomach:- intestine:- colon:4.55     liver/hepato:3.31        lung:4.20    bladder:- kidney:4.31 pituitary:- thyroid/parathyroid:3.85 adrenal gland:4.45 pancreas:- breast:4.30 salivary:-

Gene Information

IDs

Refseq ID NM_006339
Gene ID 10362
Unigene ID Hs.406534
Probe set ID 210719_s_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000064961
GTEx ID ENSG00000064961

Orthologous Gene

Mouse[3]  NM_001163165, NM_001163166, NM_010440
Rat[1]  NM_001108731, NM_001163166, NM_010440

Chromosomal Region

19p13.3  [3,572,775  -  3,579,086]

Gene Family (Interpro ID)

IPR000910  High mobility group, HMG1/HMG2
IPR000135  High mobility group, HMG1/HMG2, subgroup
IPR009071  High mobility group, superfamily

Link to Pubmed  (Pubmed ID)

10486208
10773667
11207365
11997092
12032298
12083779
12083780
12234937
12477932
12493763
12809554
14702039
15057824
15325272
15489334
16079794
16140033
16169070
16189514
17961134
18816836
19471022
20530487
21258344
21399666
21693764
21832049
22570500
22939629
23752268
24816145

Gene Ontology  (GO ID)

Biological Process

GO:0007596  blood coagulation
GO:0007049  cell cycle
GO:0016568  chromatin modification
GO:0006325  chromatin organization
GO:0033234  negative regulation of protein sumoylation
GO:0045666  positive regulation of neuron differentiation
GO:0006355  regulation of transcription, DNA-dependent
GO:0006351  transcription, DNA-dependent

Cellular Component

GO:0005694  chromosome
GO:0005654  nucleoplasm
GO:0005634  nucleus

Molecular Function

GO:0003677  DNA binding
GO:0005515  protein binding
GO:0046982  protein heterodimerization activity
GO:0003700  transcription factor activity