ribosomal modification protein rimK-like family member A

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Synonym

FAM80A, family with sequence similarity 80, member A, RP11-157D18.1, MGC47816

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:9.50 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:30.70 spine:- retina:237.30 eye:41.10 artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
GeneChip nodata
CAGE cerebrum:2.98 cerebellum:- brain stem:2.58 corpus callosum/glia:1.78 pineal gland:2.79 peripheral nerve:- spine:2.21 retina:- eye:- artery/aorta:0.59 vein:0.47 lymphnode:0.17 peripheral blood:- spleen:0.25 thymus:0.18 bone marrow:- adipose:0.46 bone:- skin:-
RNA-seq cerebrum:2.30 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0.22 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0.22 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:- esophagus:- stomach:- intestine:- colon:8.50     liver/hepato:-        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:17.80 breast:- salivary:-
GeneChip nodata
CAGE uterus:0.51 placenta:0.59 prostate:1.03 ovary:0.07 testis:1.21 heart:2.27 muscle:0.45 esophagus:1.26 stomach:- intestine:0.77 colon:2.07     liver/hepato:0.26    lung:1.97 bladder:1.27 kidney:1.34 pituitary:1.65 thyroid/parathyroid:1.30 adrenal gland:- pancreas:1.21 breast:0.90 salivary:0.62
RNA-seq uterus:- placenta:- prostate:0.45 ovary:0.10 testis:0.85 heart:1.78 muscle:0.13 esophagus:- stomach:- intestine:- colon:0.86     liver/hepato:0.02        lung:0.41    bladder:- kidney:0.66 pituitary:- thyroid/parathyroid:0.33 adrenal gland:0.12 pancreas:- breast:0.05 salivary:-

Gene Information

IDs

Refseq ID NM_173642
Gene ID 284716
Unigene ID Hs.420244
Probe set ID -
Ensembl ID ENSG00000177181
GTEx ID ENSG00000177181

Orthologous Gene

Mouse[1]  NM_177572
Rat[1]  NM_177572

Chromosomal Region

1p34.2  [42,846,466  -  42,880,850]

Gene Family (Interpro ID)

IPR011761  ATP-grasp fold
IPR004666  S6 modification enzyme RimK

Link to Pubmed  (Pubmed ID)

12477932
15489334
16710414
17207965
20657015
21454531
21906983

Gene Ontology  (GO ID)

Biological Process

GO:0006464  protein modification process

Cellular Component

GO:0005737  cytoplasm

Molecular Function

GO:0016881  acid-amino acid ligase activity
GO:0005524  ATP binding
GO:0046872  metal ion binding