hippocalcin

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Synonym

HPCA, BDR2, hippocalcin, Calcium-binding protein BDR-2

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:87.70 cerebellum:- brain stem:- corpus callosum/glia:87.50 pineal gland:- peripheral nerve:- spine:- retina:- eye:82.30 artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:9.60
GeneChip cerebrum:7.58 cerebellum:6.13 brain stem:5.83 corpus callosum/glia:5.65 pineal gland:- peripheral nerve:4.81 spine:5.44 retina:- eye:- artery/aorta:5 vein:5.35 lymphnode:5.01 peripheral blood:- spleen:4.91 thymus:4.60 bone marrow:5.05 adipose:5.10 bone:- skin:5.23
CAGE cerebrum:4.89 cerebellum:- brain stem:1.35 corpus callosum/glia:3.11 pineal gland:1.53 peripheral nerve:- spine:1.73 retina:- eye:- artery/aorta:0.18 vein:0.18 lymphnode:0 peripheral blood:- spleen:0.09 thymus:0 bone marrow:- adipose:0 bone:- skin:-
RNA-seq cerebrum:6.10 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0.25 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:7.30 prostate:11.30 ovary:- testis:8.70 heart:- muscle:- esophagus:- stomach:- intestine:- colon:17     liver/hepato:-        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-
GeneChip uterus:5.01 placenta:4.75 prostate:4.74 ovary:5.14 testis:5.23 heart:5.16 muscle:5.42 esophagus:5.16 stomach:5 intestine:5.20 colon:5.23 liver/hepato:5.22 lung:5.23 bladder:- kidney:5.10 pituitary:5.27 thyroid/parathyroid:4.94 adrenal gland:5.09 pancreas:5.52 breast:4.82 salivary:5.35
CAGE uterus:0.35 placenta:0 prostate:0.15 ovary:0.32 testis:0.47 heart:0 muscle:0 esophagus:0 stomach:- intestine:0.14 colon:0.04     liver/hepato:0    lung:0 bladder:0.09 kidney:0.27 pituitary:0.66 thyroid/parathyroid:0.17 adrenal gland:- pancreas:0.94 breast:0 salivary:0
RNA-seq uterus:- placenta:- prostate:0.30 ovary:0.63 testis:1.05 heart:0.01 muscle:0.05 esophagus:- stomach:- intestine:- colon:0.38     liver/hepato:0        lung:0.02    bladder:- kidney:0.20 pituitary:- thyroid/parathyroid:0.19 adrenal gland:0.02 pancreas:- breast:0.17 salivary:-

Gene Information

IDs

Refseq ID NM_002143
Gene ID 3208
Unigene ID Hs.632391
Probe set ID 205454_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000121905
GTEx ID ENSG00000121905

Orthologous Gene

Mouse[4]  NM_001130419, NM_010471
Rat[1]  NM_017122, NM_010471

Chromosomal Region

1p35.1  [33,351,595  -  33,364,042]

Gene Family (Interpro ID)

IPR002048  Calcium-binding EF-hand
IPR018249  EF-HAND 2
IPR001125  Recoverin

Link to Pubmed  (Pubmed ID)

1280427
8166736
8360179
8387172
9427749
9931466
10899114
11836243
11964161
12477932
14638856
15489334
16053445
17286855
19332348
19686238
21890473
21906983
22544757
24816145

Gene Ontology  (GO ID)

Biological Process

GO:0048839  inner ear development

Molecular Function

GO:0003779  actin binding
GO:0005509  calcium ion binding