chromosome 12 open reading frame 48

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Synonym

C12orf48, FLJ20641, chromosome 12 open reading frame 48

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:5.90 cerebellum:- brain stem:- corpus callosum/glia:29.20 pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:66.60 lymphnode:50.60 peripheral blood:- spleen:- thymus:51.50 bone marrow:19.70 adipose:- bone:- skin:4.80
GeneChip cerebrum:3.24 cerebellum:3.30 brain stem:3.47 corpus callosum/glia:3.21 pineal gland:- peripheral nerve:3.18 spine:3.08 retina:- eye:- artery/aorta:3.21 vein:3.41 lymphnode:3.43 peripheral blood:- spleen:3.17 thymus:4.35 bone marrow:4.23 adipose:3.26 bone:- skin:3.57
CAGE cerebrum:0.76 cerebellum:- brain stem:1.02 corpus callosum/glia:0.63 pineal gland:0.35 peripheral nerve:- spine:0.67 retina:- eye:- artery/aorta:0.59 vein:0.96 lymphnode:1.43 peripheral blood:- spleen:1.60 thymus:2.84 bone marrow:- adipose:0.63 bone:- skin:-
RNA-seq cerebrum:0.31 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0.87 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0.45 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:27.30 placenta:3.60 prostate:- ovary:- testis:30.30 heart:- muscle:- esophagus:- stomach:21.20 intestine:- colon:17     liver/hepato:10.60        lung:4.90    bladder:- kidney:10.40 pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-
GeneChip uterus:3.59 placenta:3.50 prostate:3.36 ovary:3.48 testis:3.44 heart:3.23 muscle:3.43 esophagus:3.73 stomach:3.54 intestine:3.69 colon:3.39 liver/hepato:3.10 lung:3.27 bladder:- kidney:3.11 pituitary:3.11 thyroid/parathyroid:3.10 adrenal gland:3.06 pancreas:3.01 breast:3.33 salivary:3.16
CAGE uterus:0.91 placenta:1.30 prostate:1.19 ovary:0.52 testis:2.38 heart:0.47 muscle:0.17 esophagus:1.68 stomach:- intestine:1.31 colon:1.45     liver/hepato:0.26    lung:0.88 bladder:0.53 kidney:1.17 pituitary:0 thyroid/parathyroid:0.23 adrenal gland:- pancreas:0.58 breast:0.55 salivary:0.83
RNA-seq uterus:- placenta:- prostate:0.48 ovary:0.76 testis:1.84 heart:0.25 muscle:0.00 esophagus:- stomach:- intestine:- colon:0.52     liver/hepato:0.25        lung:0.32    bladder:- kidney:0.63 pituitary:- thyroid/parathyroid:0.63 adrenal gland:0.87 pancreas:- breast:0.83 salivary:-

Gene Information

IDs

Refseq ID NM_017915
Gene ID 55010
Unigene ID Hs.330663
Probe set ID 220060_s_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000185480
GTEx ID ENSG00000185480

Orthologous Gene

Mouse[1]  NM_029249
Rat[1]  NM_001166676

Chromosomal Region

12q23.2  [102,513,956  -  102,591,298]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

12477932
14702039
15489334
16344560
18029348
19893584
20379614
20931645
21906983
21963094
22153967
22505724
23039964
23436799
24396997

Gene Ontology  (GO ID)

Biological Process

GO:0006281  DNA repair

Cellular Component

GO:0000785  chromatin
GO:0005737  cytoplasm
GO:0005730  nucleolus
GO:0005634  nucleus

Molecular Function

GO:0003677  DNA binding
GO:0005515  protein binding