yrdC domain containing (E. coli)

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Synonym

IRIP, yrdC domain containing (E. coli), YRDC, RP11-109P14.4, FLJ26165, FLJ23476, yrdC domain containing (E.coli), SUA5, DRIP3

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:22.50 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:61.30 spine:- retina:- eye:17.60 artery/aorta:- vein:- lymphnode:80.90 peripheral blood:54.70 spleen:- thymus:- bone marrow:- adipose:- bone:- skin:9.60
GeneChip cerebrum:5.84 cerebellum:5.95 brain stem:5.90 corpus callosum/glia:5.86 pineal gland:- peripheral nerve:5.84 spine:5.86 retina:- eye:- artery/aorta:5.65 vein:5.61 lymphnode:6 peripheral blood:- spleen:6.08 thymus:5.89 bone marrow:5.80 adipose:5.69 bone:- skin:6.40
CAGE cerebrum:2.06 cerebellum:- brain stem:2.02 corpus callosum/glia:2.17 pineal gland:1.88 peripheral nerve:- spine:1.79 retina:- eye:- artery/aorta:1.85 vein:2.16 lymphnode:2.47 peripheral blood:- spleen:2.27 thymus:2.31 bone marrow:- adipose:2.01 bone:- skin:-
RNA-seq cerebrum:2.66 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:2.76 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:2.11 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:9.10 placenta:72.90 prostate:11.30 ovary:37.30 testis:47.60 heart:51.10 muscle:- esophagus:- stomach:42.50 intestine:32.40 colon:17     liver/hepato:-        lung:19.60    bladder:- kidney:20.80 pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:17.80 breast:- salivary:-
GeneChip uterus:5.76 placenta:6.98 prostate:6.16 ovary:5.83 testis:7.25 heart:5.65 muscle:5.45 esophagus:6.33 stomach:6.11 intestine:5.92 colon:6.30 liver/hepato:6.10 lung:5.92 bladder:- kidney:6.06 pituitary:6.13 thyroid/parathyroid:5.93 adrenal gland:6.11 pancreas:6.28 breast:6.23 salivary:6.01
CAGE uterus:2.04 placenta:2.90 prostate:2.22 ovary:2.01 testis:3.11 heart:1.82 muscle:2.21 esophagus:2.31 stomach:- intestine:2.34 colon:2.48     liver/hepato:2.81    lung:2.11 bladder:2.05 kidney:2.29 pituitary:2.11 thyroid/parathyroid:2.05 adrenal gland:- pancreas:2.66 breast:2.41 salivary:2.06
RNA-seq uterus:- placenta:- prostate:2.74 ovary:2.04 testis:3.70 heart:1.60 muscle:1.59 esophagus:- stomach:- intestine:- colon:1.79     liver/hepato:3.16        lung:3.12    bladder:- kidney:2.97 pituitary:- thyroid/parathyroid:2.53 adrenal gland:3.02 pancreas:- breast:2.20 salivary:-

Gene Information

IDs

Refseq ID NM_024640
Gene ID 79693
Unigene ID Hs.301564
Probe set ID 218647_s_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000196449
GTEx ID ENSG00000196449

Orthologous Gene

Mouse[1]  NM_153566
Rat [0]  

Chromosomal Region

1p34.3  [38,268,616  -  38,273,857]

Gene Family (Interpro ID)

IPR017945  DHBP synthase RibB-like alpha/beta domain
IPR006070  Sua5/YciO/YrdC, N-terminal
IPR004388  Sua5/YciO/YrdC/YwlC

Link to Pubmed  (Pubmed ID)

2675563
12477932
12730717
16024787
16196087
17643375
19279227
21906983
22939629
24816145

Gene Ontology  (GO ID)

Biological Process

GO:0051051  negative regulation of transport

Cellular Component

GO:0016020  membrane
GO:0005739  mitochondrion

Molecular Function

GO:0003725  double-stranded RNA binding