RAR-related orphan receptor alpha

Synonym

ROR1, Rzra, Nr1f1, nmf267, ROR2, staggerer, Nuclear receptor RZR-alpha, ROR3, Rora, 9530021D13Rik, sg, RAR-related orphan receptor alpha, Nuclear receptor ROR-alpha

normal 40 tissues
developmental tissues and primary cells（FANTOM5 CAGE）

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:-

cerebellum:-

brain stem:63.60

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:-

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:212.70

bone:-

skin:-

GeneChip

cerebrum:8.84

cerebellum:11.31

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:7.26

spine:8.93

retina:9.86

eye:8.39

artery/aorta:-

vein:9.32

lymphnode:7.39

peripheral blood:-

spleen:6.81

thymus:-

bone marrow:5.48

adipose:8.48

bone:6.98

skin:11.28

CAGE

cerebrum:4.15

cerebellum:-

brain stem:4.28

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:3.83

retina:-

eye:-

artery/aorta:3.35

vein:-

lymphnode:2.90

peripheral blood:-

spleen:1.84

thymus:1.90

bone marrow:-

adipose:-

bone:2.09

skin:4.68

RNA-seq

cerebrum:1.84

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:-

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:-

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:-

placenta:41.40

prostate:-

ovary:-

testis:-

heart:-

muscle:-

esophagus:-

stomach:-

intestine:-

colon:-

liver/hepato:-

lung:-

bladder:66.20

kidney:-

pituitary:-

thyroid/parathyroid:-

adrenal gland:424.40

pancreas:-

breast:6.50

salivary:-

GeneChip

uterus:7.80

placenta:9.22

prostate:8.41

ovary:8.89

testis:9.03

heart:8.09

muscle:10.09

esophagus:-

stomach:7.88

intestine:6.74

colon:-

liver/hepato:9.80

lung:9.01

bladder:8.69

kidney:8.88

pituitary:8.62

thyroid/parathyroid:-

adrenal gland:10.16

pancreas:8.57

breast:9.44

salivary:8.76

CAGE

uterus:2.61

placenta:2.69

prostate:3.08

ovary:3.23

testis:1.89

heart:-

muscle:-

esophagus:-

stomach:2.90

intestine:1.75

colon:2.37

liver/hepato:4.05

lung:3.62

bladder:3.61

kidney:-

pituitary:3.86

thyroid/parathyroid:-

adrenal gland:4.15

pancreas:3.74

breast:4.60

salivary:-

RNA-seq

uterus:-

placenta:-

prostate:-

ovary:-

testis:-

heart:-

muscle:1.67

esophagus:-

stomach:-

intestine:-

colon:-

liver/hepato:2.31

lung:-

bladder:-

kidney:-

pituitary:-

thyroid/parathyroid:-

adrenal gland:-

pancreas:-

breast:-

salivary:-

IDs

Refseq ID	NM_013646
Gene ID	19883
Unigene ID	Mm.378450
Probe set ID	1424034_at [Mouse430_2]
Ensembl ID	ENSMUSG00000032238

Orthologous Gene

Human[16]	NM_002943, NM_134260, NM_134261, NM_134262
Rat[1]	NM_001106834, NM_134260, NM_134261, NM_134262

Chromosomal Region

Gene Family (Interpro ID)

IPR003079	Nuclear receptor ROR
IPR001723	Steroid hormone receptor
IPR001728	Thyroid hormone receptor
IPR013088	Zinc finger, NHR/GATA-type
IPR001628	Zinc finger, nuclear hormone receptor-type

Gene Ontology (GO ID)

Biological Process

GO:0021702	cerebellar Purkinje cell differentiation
GO:0046068	cGMP metabolic process
GO:0030522	intracellular receptor-mediated signaling pathway
GO:0006809	nitric oxide biosynthetic process
GO:0045944	positive regulation of transcription from RNA polymerase II promoter
GO:0043030	regulation of macrophage activation
GO:0006355	regulation of transcription, DNA-dependent
GO:0043401	steroid hormone mediated signaling pathway
GO:0006351	transcription, DNA-dependent

Cellular Component

GO:0005634

nucleus

Molecular Function

GO:0003677	DNA binding
GO:0004879	ligand-dependent nuclear receptor activity
GO:0046872	metal ion binding
GO:0005515	protein binding
GO:0043565	sequence-specific DNA binding
GO:0003707	steroid hormone receptor activity
GO:0003700	transcription factor activity
GO:0008270	zinc ion binding

RAR-related orphan receptor alpha

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function