protocadherin 20

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Synonym

protocadherin 20, Pcdh20, C630015B17Rik, Protocadherin-20 precursor, PCDH13

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST nodata
GeneChip cerebrum:5.95 cerebellum:4.47 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:3.67 spine:4.70 retina:3.94 eye:3.97 artery/aorta:- vein:4.27 lymphnode:3.81 peripheral blood:- spleen:3.86 thymus:- bone marrow:3.82 adipose:3.72 bone:3.81 skin:4.12
CAGE nodata
RNA-seq cerebrum:1.05 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST nodata
GeneChip uterus:3.47 placenta:3.81 prostate:3.72 ovary:3.63 testis:3.70 heart:3.90 muscle:3.89 esophagus:- stomach:3.85 intestine:3.93 colon:- liver/hepato:3.97 lung:3.81 bladder:3.63 kidney:3.86 pituitary:4.67 thyroid/parathyroid:- adrenal gland:3.76 pancreas:4.44 breast:3.69 salivary:3.85
CAGE nodata
RNA-seq uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:0.47 esophagus:- stomach:- intestine:- colon:-     liver/hepato:0        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-

Gene Information

IDs

Refseq ID NM_178685
Gene ID 219257
Unigene ID -
Probe set ID 1451454_at  [Mouse430_2]
Ensembl ID ENSMUSG00000050505

Orthologous Gene

Human[1]  NM_022843
Rat[1]  NM_001107280

Chromosomal Region

-

Gene Family (Interpro ID)

IPR002126  Cadherin
IPR015919  Cadherin-like

Link to Pubmed  (Pubmed ID)

10349636
11042159
11076861
11125038
11217851
12466851
12477932
16141072
16141073
16602821
18095321
19302145
21267068
21677750

Gene Ontology  (GO ID)

Biological Process

GO:0008150  biological_process
GO:0007155  cell adhesion
GO:0007156  homophilic cell adhesion

Cellular Component

GO:0016021  integral to membrane
GO:0016020  membrane
GO:0005886  plasma membrane

Molecular Function

GO:0005509  calcium ion binding