collagen, type XXV, alpha 1

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Synonym

2700062B08Rik, procollagen, type XXV, alpha 1, Col25a1

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST nodata
GeneChip cerebrum:6.59 cerebellum:6.62 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:6.18 spine:6.66 retina:6.43 eye:6.62 artery/aorta:- vein:6.79 lymphnode:6.25 peripheral blood:- spleen:6.62 thymus:- bone marrow:6.46 adipose:6.56 bone:6.58 skin:6.68
CAGE cerebrum:1.59 cerebellum:- brain stem:2.55 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:1.94 retina:- eye:- artery/aorta:0 vein:- lymphnode:0 peripheral blood:- spleen:0 thymus:0 bone marrow:- adipose:- bone:0 skin:0.15
RNA-seq cerebrum:1.56 cerebellum:1.56 brain stem:1.56 corpus callosum/glia:1.56 pineal gland:1.56 peripheral nerve:1.56 spine:1.56 retina:1.56 eye:1.56 artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST nodata
GeneChip uterus:6.14 placenta:6.65 prostate:6.48 ovary:6.24 testis:6.28 heart:6.58 muscle:6.42 esophagus:- stomach:6.44 intestine:6.33 colon:- liver/hepato:7.07 lung:6.46 bladder:6.75 kidney:6.45 pituitary:6.91 thyroid/parathyroid:- adrenal gland:6.29 pancreas:7.88 breast:6.45 salivary:6.44
CAGE uterus:0.17 placenta:0.48 prostate:0 ovary:1.27 testis:0 heart:- muscle:- esophagus:- stomach:0 intestine:0 colon:0     liver/hepato:0.26    lung:0 bladder:3.31 kidney:- pituitary:2.53 thyroid/parathyroid:- adrenal gland:1.12 pancreas:0 breast:0.12 salivary:-
RNA-seq uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:- esophagus:- stomach:- intestine:- colon:-     liver/hepato:-        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-

Gene Information

IDs

Refseq ID NM_029838
Gene ID 77018
Unigene ID -
Probe set ID 1421427_at  [Mouse430_2]
Ensembl ID ENSMUSG00000058897

Orthologous Gene

Human[2]  NM_032518, NM_198721
Rat[2]  NM_032518, NM_198721

Chromosomal Region

3G3  [129,883,809  -  130,302,795]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

10349636
11042159
11076861
11217851
11927537
12466851
12477932
16141072
16141073
19548013
21267068
24154525
24453327

Gene Ontology  (GO ID)

Biological Process

GO:0008150  biological_process

Cellular Component

GO:0005581  collagen
GO:0005576  extracellular region
GO:0005615  extracellular space
GO:0016021  integral to membrane
GO:0005887  integral to plasma membrane
GO:0016020  membrane

Molecular Function

GO:0001540  beta-amyloid binding
GO:0008201  heparin binding