synaptonemal complex protein 2

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Synonym

synaptonemal complex protein 2, hsSCP2, Synaptonemal complex lateral element protein, Synaptonemal complex protein 2, SYCP2, SCP-2

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:7.10 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:23.50 artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:19.70 adipose:- bone:- skin:-
GeneChip cerebrum:2.70 cerebellum:2.77 brain stem:2.74 corpus callosum/glia:2.83 pineal gland:- peripheral nerve:2.65 spine:2.65 retina:- eye:- artery/aorta:2.58 vein:2.49 lymphnode:2.70 peripheral blood:- spleen:2.65 thymus:2.58 bone marrow:2.62 adipose:2.65 bone:- skin:2.77
CAGE cerebrum:0.92 cerebellum:- brain stem:1.07 corpus callosum/glia:0.43 pineal gland:0.21 peripheral nerve:- spine:0.64 retina:- eye:- artery/aorta:0.34 vein:0.18 lymphnode:0.86 peripheral blood:- spleen:0.66 thymus:1.01 bone marrow:- adipose:0.78 bone:- skin:-
RNA-seq cerebrum:0.74 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0.75 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0.54 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:14.60 prostate:11.30 ovary:- testis:95.20 heart:12.80 muscle:- esophagus:- stomach:254.90 intestine:- colon:-     liver/hepato:10.60        lung:9.80    bladder:- kidney:10.40 pituitary:116 thyroid/parathyroid:- adrenal gland:- pancreas:- breast:27.90 salivary:-
GeneChip uterus:2.73 placenta:2.94 prostate:3.08 ovary:2.50 testis:6.28 heart:2.65 muscle:2.62 esophagus:2.53 stomach:2.89 intestine:2.61 colon:2.53 liver/hepato:2.57 lung:2.61 bladder:- kidney:2.79 pituitary:2.57 thyroid/parathyroid:2.64 adrenal gland:2.69 pancreas:2.51 breast:3.24 salivary:2.62
CAGE uterus:0.13 placenta:0.72 prostate:0.81 ovary:0 testis:3.70 heart:0.56 muscle:0.09 esophagus:0.26 stomach:- intestine:0.21 colon:0.29     liver/hepato:0    lung:0.65 bladder:0.18 kidney:0.78 pituitary:0.52 thyroid/parathyroid:0.32 adrenal gland:- pancreas:0.58 breast:0.55 salivary:0.36
RNA-seq uterus:- placenta:- prostate:0.36 ovary:0.27 testis:3.86 heart:0.31 muscle:0 esophagus:- stomach:- intestine:- colon:0.30     liver/hepato:0.12        lung:0.32    bladder:- kidney:0.78 pituitary:- thyroid/parathyroid:0.53 adrenal gland:0.76 pancreas:- breast:0.87 salivary:-

Gene Information

IDs

Refseq ID NM_014258
Gene ID 10388
Unigene ID Hs.202676
Probe set ID 206546_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000196074
GTEx ID ENSG00000196074

Orthologous Gene

Mouse[1]  NM_177191
Rat [0]  

Chromosomal Region

20q13.33  [58,438,621  -  58,508,710]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

9592139
10341103
11780052
12477932
20378615

Gene Ontology  (GO ID)

Biological Process

GO:0006915  apoptosis
GO:0051301  cell division
GO:0007143  female meiosis
GO:0009566  fertilization
GO:0048808  male genitalia morphogenesis
GO:0007140  male meiosis
GO:0007128  meiotic prophase I
GO:0007130  synaptonemal complex assembly

Cellular Component

GO:0000800  lateral element
GO:0005634  nucleus
GO:0000795  synaptonemal complex

Molecular Function

GO:0003677  DNA binding
GO:0046982  protein heterodimerization activity