RanBP-type and C3HC4-type zinc finger containing 1

Synonym

RanBP-type and C3HC4-type zinc finger containing 1, RBCK1, RNF54, ZRANB4, RBCK2, chromosome 20 open reading frame 18, UBCE7IP3, C20orf18, RING finger protein 54, HBV-associated factor 4, Hepatitis B virus X-associated protein 4

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:30.80

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:153.40

spine:224.60

retina:-

eye:76.40

artery/aorta:-

vein:66.60

lymphnode:252.80

peripheral blood:127.50

spleen:56.70

thymus:103.10

bone marrow:19.70

adipose:40.30

bone:25.60

skin:19.20

GeneChip

cerebrum:6.82

cerebellum:6.98

brain stem:6.82

corpus callosum/glia:7.09

pineal gland:-

peripheral nerve:6.82

spine:6.82

retina:-

eye:-

artery/aorta:6.97

vein:6.72

lymphnode:7.34

peripheral blood:-

spleen:7.48

thymus:7.44

bone marrow:6.85

adipose:6.94

bone:-

skin:6.45

CAGE

cerebrum:3.83

cerebellum:-

brain stem:3.74

corpus callosum/glia:4.02

pineal gland:4.32

peripheral nerve:-

spine:3.98

retina:-

eye:-

artery/aorta:3.92

vein:4.25

lymphnode:3.91

peripheral blood:-

spleen:3.84

thymus:4.34

bone marrow:-

adipose:3.78

bone:-

skin:-

RNA-seq

cerebrum:2.09

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:4.09

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:3.04

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:27.30

placenta:80.10

prostate:-

ovary:111.80

testis:60.60

heart:25.50

muscle:-

esophagus:-

stomach:63.70

intestine:64.80

colon:135.70

liver/hepato:-

lung:39.10

bladder:-

kidney:31.20

pituitary:-

thyroid/parathyroid:163.70

adrenal gland:-

pancreas:115.60

breast:37.20

salivary:-

GeneChip

uterus:6.71

placenta:6.78

prostate:6.65

ovary:6.61

testis:6.65

heart:6.89

muscle:6.70

esophagus:6.91

stomach:6.97

intestine:6.83

colon:7.23

liver/hepato:7.42

lung:7.28

bladder:-

kidney:7.05

pituitary:7.41

thyroid/parathyroid:7.12

adrenal gland:7.50

pancreas:6.87

breast:6.86

salivary:7.01

CAGE

uterus:3.85

placenta:4.08

prostate:4.00

ovary:3.91

testis:3.85

heart:3.87

muscle:3.87

esophagus:4.05

stomach:-

intestine:4.48

colon:4.35

liver/hepato:4.41

lung:4.30

bladder:3.85

kidney:3.58

pituitary:4.06

thyroid/parathyroid:3.95

adrenal gland:-

pancreas:3.93

breast:4.08

salivary:3.76

RNA-seq

uterus:-

placenta:-

prostate:3.89

ovary:4.02

testis:3.61

heart:2.63

muscle:3.27

esophagus:-

stomach:-

intestine:-

colon:3.44

liver/hepato:3.21

lung:3.67

bladder:-

kidney:3.34

pituitary:-

thyroid/parathyroid:3.36

adrenal gland:3.52

pancreas:-

breast:3.31

salivary:-

IDs

Refseq ID	NM_031229
Gene ID	10616
Unigene ID	Hs.247280
Probe set ID	207713_s_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000125826
GTEx ID	ENSG00000125826

Orthologous Gene

Mouse[2]	NM_001083921, NM_019705
Rat [0]

Chromosomal Region

20p13 [388,142 - 411,610]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

IPR019955

Ubiquitin supergroup

GO:0032088	negative regulation of NF-kappaB transcription factor activity
GO:0043065	positive regulation of apoptosis
GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB cascade
GO:0042346	positive regulation of NF-kappaB import into nucleus
GO:0051092	positive regulation of NF-kappaB transcription factor activity
GO:0043161	proteasomal ubiquitin-dependent protein catabolic process
GO:0000209	protein polyubiquitination
GO:0050852	T cell receptor signaling pathway
GO:0006351	transcription, DNA-dependent
GO:0019048	virus-host interaction

GO:0003677	DNA binding
GO:0005515	protein binding
GO:0003700	transcription factor activity
GO:0043130	ubiquitin binding
GO:0004842	ubiquitin-protein ligase activity
GO:0008270	zinc ion binding

RanBP-type and C3HC4-type zinc finger containing 1

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Molecular Function