tripartite motif-containing 16

 jump to detail

Synonym

tripartite motif-containing 16, Tripartite motif-containing protein 16, Estrogen-responsive B box protein, TRIM16, EBBP

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:35.60 cerebellum:37.80 brain stem:- corpus callosum/glia:116.60 pineal gland:- peripheral nerve:- spine:- retina:- eye:17.60 artery/aorta:119.90 vein:- lymphnode:- peripheral blood:18.20 spleen:37.80 thymus:38.70 bone marrow:19.70 adipose:121 bone:76.80 skin:129.60
GeneChip cerebrum:5.64 cerebellum:5.61 brain stem:5.77 corpus callosum/glia:6.07 pineal gland:- peripheral nerve:6.09 spine:6.27 retina:- eye:- artery/aorta:5.64 vein:6.28 lymphnode:6.27 peripheral blood:- spleen:5.31 thymus:5.69 bone marrow:5.92 adipose:6.07 bone:- skin:6.69
CAGE cerebrum:1.69 cerebellum:- brain stem:2.25 corpus callosum/glia:1.76 pineal gland:1.49 peripheral nerve:- spine:1.98 retina:- eye:- artery/aorta:1.65 vein:1.17 lymphnode:1.99 peripheral blood:- spleen:1.09 thymus:1.44 bone marrow:- adipose:1.66 bone:- skin:-
RNA-seq cerebrum:2.17 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:2.65 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:3.07 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:9.10 placenta:47.40 prostate:45.10 ovary:37.30 testis:8.70 heart:25.50 muscle:40.20 esophagus:342.80 stomach:42.50 intestine:- colon:67.80     liver/hepato:10.60        lung:63.50    bladder:- kidney:10.40 pituitary:- thyroid/parathyroid:163.70 adrenal gland:152.40 pancreas:35.60 breast:37.20 salivary:-
GeneChip uterus:5.91 placenta:6.79 prostate:5.07 ovary:5.82 testis:5.81 heart:5.91 muscle:6.11 esophagus:8.63 stomach:6.08 intestine:6.16 colon:6.05 liver/hepato:5.26 lung:6.02 bladder:- kidney:5.48 pituitary:5.17 thyroid/parathyroid:5.80 adrenal gland:6.18 pancreas:5.87 breast:6.20 salivary:5.76
CAGE uterus:1.60 placenta:2.05 prostate:1.30 ovary:1.08 testis:1.53 heart:1.20 muscle:1.14 esophagus:2.31 stomach:- intestine:0.93 colon:1.69     liver/hepato:0.71    lung:1.25 bladder:1.73 kidney:1.19 pituitary:1.02 thyroid/parathyroid:1.23 adrenal gland:- pancreas:1.42 breast:1.53 salivary:1.39
RNA-seq uterus:- placenta:- prostate:3.14 ovary:2.08 testis:2.32 heart:2.07 muscle:2.13 esophagus:- stomach:- intestine:- colon:2.95     liver/hepato:0.88        lung:2.87    bladder:- kidney:2.75 pituitary:- thyroid/parathyroid:4.13 adrenal gland:2.64 pancreas:- breast:3.57 salivary:-

Gene Information

IDs

Refseq ID NM_006470
Gene ID 10626
Unigene ID Hs.123534
Probe set ID 204341_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000221926
GTEx ID ENSG00000221926

Orthologous Gene

Mouse[2]  NM_053169
Rat[1]  NM_001135033

Chromosomal Region

17p12  [15,531,274  -  15,587,613]

Gene Family (Interpro ID)

IPR001870  B302 (SPRY)-like
IPR003879  Butyrophylin-like
IPR003877  SPla/RYanodine receptor SPRY
IPR018355  SPla/RYanodine receptor subgroup
IPR000315  Zinc finger, B-box

Link to Pubmed  (Pubmed ID)

9817599
11331580
11919186
12477932
14702039
15302935
15489334
16079077
16169070
16575408
16636064
18029348
19147277
20729920
21044950
21832049
21963094
22629402
22863883
23404198
23422002

Gene Ontology  (GO ID)

Biological Process

GO:0043966  histone H3 acetylation
GO:0043967  histone H4 acetylation
GO:0050718  positive regulation of interleukin-1 beta secretion
GO:0045618  positive regulation of keratinocyte differentiation
GO:0048386  positive regulation of retinoic acid receptor signaling pathway
GO:0045893  positive regulation of transcription, DNA-dependent
GO:0060416  response to growth hormone stimulus
GO:0046683  response to organophosphorus
GO:0032526  response to retinoic acid

Cellular Component

GO:0005737  cytoplasm
GO:0016605  PML body

Molecular Function

GO:0003677  DNA binding
GO:0019966  interleukin-1 binding
GO:0032089  NACHT domain binding
GO:0005515  protein binding
GO:0008270  zinc ion binding