chromodomain helicase DNA binding protein 1

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Synonym

DKFZp686E2337, chromodomain helicase DNA binding protein 1, CHD-1, ATP-dependent helicase CHD1, CHD1, Chromodomain-helicase-DNA-binding protein 1

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:20.10 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:112.30 retina:474.60 eye:58.80 artery/aorta:30 vein:- lymphnode:50.60 peripheral blood:36.40 spleen:- thymus:128.80 bone marrow:39.40 adipose:- bone:- skin:52.80
GeneChip cerebrum:5.83 cerebellum:6.79 brain stem:5.96 corpus callosum/glia:6.61 pineal gland:- peripheral nerve:6.60 spine:6.35 retina:- eye:- artery/aorta:6.89 vein:7.06 lymphnode:7.37 peripheral blood:- spleen:7.77 thymus:10.03 bone marrow:7.82 adipose:6.88 bone:- skin:6.77
CAGE nodata
RNA-seq cerebrum:2.20 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:3.01 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:3.07 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:36.50 placenta:32.80 prostate:22.50 ovary:149.10 testis:30.30 heart:38.30 muscle:20.10 esophagus:- stomach:42.50 intestine:- colon:59.40     liver/hepato:105.60        lung:39.10    bladder:251.20 kidney:10.40 pituitary:116 thyroid/parathyroid:- adrenal gland:- pancreas:- breast:65.10 salivary:-
GeneChip uterus:7.43 placenta:7.54 prostate:7.35 ovary:7.49 testis:7.28 heart:6.60 muscle:6.07 esophagus:6.14 stomach:6.75 intestine:6.58 colon:6.04 liver/hepato:7.01 lung:7.64 bladder:- kidney:6.37 pituitary:6.14 thyroid/parathyroid:6.40 adrenal gland:7.13 pancreas:5.61 breast:7.06 salivary:5.88
CAGE nodata
RNA-seq uterus:- placenta:- prostate:2.74 ovary:3.61 testis:3.26 heart:2.32 muscle:1.81 esophagus:- stomach:- intestine:- colon:2.78     liver/hepato:2.12        lung:3.40    bladder:- kidney:2.76 pituitary:- thyroid/parathyroid:2.86 adrenal gland:3.33 pancreas:- breast:2.71 salivary:-

Gene Information

IDs

Refseq ID NM_001270
Gene ID 1105
Unigene ID Hs.643465
Probe set ID 204258_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000153922
GTEx ID ENSG00000153922

Orthologous Gene

Mouse[2]  NM_007690
Rat[1]  NM_001107465

Chromosomal Region

5q21.1  [98,190,908  -  98,262,240]

Gene Family (Interpro ID)

IPR000953  Chromo domain
IPR014001  DEAD-like helicase, N-terminal
IPR014021  Helicase, superfamily 1/2, ATP-binding domain

Link to Pubmed  (Pubmed ID)

7739555
8460153
8889548
9326634
10199952
12477932
12522270
12890497
14702039
15146197
16009940
16263726
16372014
16728976
17081983
17098252
17353931
17540172
18817785
19322201
19441106
19471022
19596686
19625449
20363151
20379614
20431927
21139048
21979373
22044751
22046413
22048254
22139082
22179824
22586326
22779921
23492366
24024966
24816145

Gene Ontology  (GO ID)

Biological Process

GO:0006338  chromatin remodeling
GO:0006357  regulation of transcription from RNA polymerase II promoter
GO:0006351  transcription, DNA-dependent

Cellular Component

GO:0005737  cytoplasm
GO:0005634  nucleus

Molecular Function

GO:0005524  ATP binding
GO:0004003  ATP-dependent DNA helicase activity
GO:0003677  DNA binding
GO:0035064  methylated histone residue binding
GO:0005515  protein binding