cleavage and polyadenylation specific factor 6, 68kDa

Synonym

CPSF 68 kDa subunit, HPBRII-7, Cleavage and polyadenylation specificity factor 6, CFIM, Pre-mRNA cleavage factor Im 68 kDa subunit, HPBRII-4, Protein HPBRII-4/7, CFIM68, CPSF6

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:68.70

cerebellum:100.80

brain stem:-

corpus callosum/glia:29.20

pineal gland:-

peripheral nerve:92

spine:-

retina:-

eye:76.40

artery/aorta:119.90

vein:66.60

lymphnode:121.30

peripheral blood:127.50

spleen:170.20

thymus:180.40

bone marrow:19.70

adipose:40.30

bone:64

skin:96

GeneChip

cerebrum:5.64

cerebellum:4.89

brain stem:5.70

corpus callosum/glia:5.71

pineal gland:-

peripheral nerve:5.96

spine:5.83

retina:-

eye:-

artery/aorta:6.45

vein:6

lymphnode:7.12

peripheral blood:-

spleen:6.97

thymus:7.95

bone marrow:6.79

adipose:6.61

bone:-

skin:6.74

CAGE

cerebrum:4.43

cerebellum:-

brain stem:4.31

corpus callosum/glia:4.30

pineal gland:4.70

peripheral nerve:-

spine:4.24

retina:-

eye:-

artery/aorta:4.04

vein:3.94

lymphnode:3.90

peripheral blood:-

spleen:3.95

thymus:4.64

bone marrow:-

adipose:3.87

bone:-

skin:-

RNA-seq

cerebrum:3.36

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:3.74

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:2.87

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:164

placenta:58.30

prostate:78.90

ovary:37.30

testis:116.80

heart:140.50

muscle:20.10

esophagus:-

stomach:85

intestine:129.60

colon:50.90

liver/hepato:105.60

lung:78.20

bladder:-

kidney:41.60

pituitary:-

thyroid/parathyroid:-

adrenal gland:253.90

pancreas:44.50

breast:65.10

salivary:-

GeneChip

uterus:7.05

placenta:7.08

prostate:7.52

ovary:7.09

testis:7.21

heart:6.21

muscle:5.84

esophagus:6.95

stomach:6.58

intestine:6.60

colon:6.52

liver/hepato:5.76

lung:6.45

bladder:-

kidney:6.43

pituitary:6.38

thyroid/parathyroid:6.83

adrenal gland:6.71

pancreas:5.80

breast:6.81

salivary:6.71

CAGE

uterus:4.37

placenta:3.89

prostate:4.05

ovary:4.17

testis:4.17

heart:3.78

muscle:3.76

esophagus:3.65

stomach:-

intestine:3.75

colon:3.89

liver/hepato:3.66

lung:4.05

bladder:4.15

kidney:3.78

pituitary:4.53

thyroid/parathyroid:4.03

adrenal gland:-

pancreas:3.73

breast:3.90

salivary:3.97

RNA-seq

uterus:-

placenta:-

prostate:3.47

ovary:3.95

testis:3.62

heart:2.17

muscle:2.81

esophagus:-

stomach:-

intestine:-

colon:2.96

liver/hepato:2.11

lung:2.73

bladder:-

kidney:3.44

pituitary:-

thyroid/parathyroid:2.81

adrenal gland:3.36

pancreas:-

breast:3.13

salivary:-

IDs

Refseq ID	NM_007007
Gene ID	11052
Unigene ID	Hs.369606
Probe set ID	202469_s_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000111605
GTEx ID	ENSG00000111605

Orthologous Gene

Mouse[1]	NM_001013391
Rat[1]	NM_001106785

Chromosomal Region

12q15 [69,633,317 - 69,668,138]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

IPR000504

RNA recognition motif, RNP-1

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

GO:0006378	mRNA polyadenylation
GO:0006397	mRNA processing
GO:0051262	protein tetramerization

Cellular Component

GO:0005849	mRNA cleavage factor complex
GO:0005730	nucleolus
GO:0005634	nucleus
GO:0042382	paraspeckles
GO:0030529	ribonucleoprotein complex

Molecular Function

GO:0003729	mRNA binding
GO:0000166	nucleotide binding
GO:0005515	protein binding
GO:0003723	RNA binding

cleavage and polyadenylation specific factor 6, 68kDa

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function