ceroid-lipofuscinosis, neuronal 5

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Synonym

Protein CLN5, FLJ90628, ceroid-lipofuscinosis, neuronal 5, Ceroid-lipofuscinosis neuronal protein 5, CLN5

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:- cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:105.60
GeneChip cerebrum:6.48 cerebellum:6.79 brain stem:6.52 corpus callosum/glia:7.45 pineal gland:- peripheral nerve:7.48 spine:7.43 retina:- eye:- artery/aorta:6.39 vein:7.49 lymphnode:7.16 peripheral blood:- spleen:7.16 thymus:7.47 bone marrow:6.41 adipose:6.86 bone:- skin:6.40
CAGE cerebrum:3.13 cerebellum:- brain stem:3.34 corpus callosum/glia:3.37 pineal gland:3.56 peripheral nerve:- spine:3.55 retina:- eye:- artery/aorta:3.61 vein:3.38 lymphnode:3.25 peripheral blood:- spleen:3.28 thymus:3.22 bone marrow:- adipose:3.56 bone:- skin:-
RNA-seq cerebrum:3.51 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:3.92 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:3.62 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:7.30 prostate:- ovary:- testis:- heart:- muscle:- esophagus:- stomach:- intestine:- colon:8.50     liver/hepato:-        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-
GeneChip uterus:7.24 placenta:7.82 prostate:7.58 ovary:8.49 testis:6.55 heart:7.20 muscle:6.06 esophagus:6.69 stomach:7.28 intestine:7.38 colon:6.96 liver/hepato:7.44 lung:7.82 bladder:- kidney:8.54 pituitary:6.73 thyroid/parathyroid:9.11 adrenal gland:6.92 pancreas:7.84 breast:7.10 salivary:7.83
CAGE uterus:3.48 placenta:3.78 prostate:3.43 ovary:3.82 testis:3.40 heart:3.44 muscle:3.04 esophagus:3.29 stomach:- intestine:3.37 colon:3.12     liver/hepato:3.68    lung:3.56 bladder:3.40 kidney:4.25 pituitary:3.84 thyroid/parathyroid:4.39 adrenal gland:- pancreas:3.32 breast:3.73 salivary:3.44
RNA-seq uterus:- placenta:- prostate:3.96 ovary:4.34 testis:4.12 heart:2.93 muscle:2.22 esophagus:- stomach:- intestine:- colon:3.98     liver/hepato:3.48        lung:3.77    bladder:- kidney:4.96 pituitary:- thyroid/parathyroid:5.44 adrenal gland:3.86 pancreas:- breast:3.89 salivary:-

Gene Information

IDs

Refseq ID NM_006493
Gene ID 1203
Unigene ID Hs.302130
Probe set ID 204084_s_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000102805
GTEx ID ENSG00000102805

Orthologous Gene

Mouse[1]  NM_001033242
Rat [0]  

Chromosomal Region

13q22.3  [77,564,795  -  77,576,652]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

193610
7942847
8661106
9662406
10477428
10740217
10992246
11722572
11971870
12125809
12134079
14997939
15728307
16399764
16814585
17353931
17607606
19174516
19201763
19309691
19941651
20052765
20157158
20301334
20301601
20467438
21890473
21906983
22431521
23160995
23464991
24058541
24250222

Gene Ontology  (GO ID)

Biological Process

GO:0007420  brain development
GO:0008219  cell death
GO:0070085  glycosylation
GO:0007042  lysosomal lumen acidification
GO:0022008  neurogenesis
GO:0042551  neuron maturation
GO:0030163  protein catabolic process
GO:0006465  signal peptide processing
GO:0007601  visual perception

Cellular Component

GO:0005783  endoplasmic reticulum
GO:0005794  Golgi apparatus
GO:0016021  integral to membrane
GO:0005765  lysosomal membrane
GO:0005764  lysosome
GO:0048471  perinuclear region of cytoplasm
GO:0005775  vacuolar lumen

Molecular Function

GO:0005537  mannose binding
GO:0005515  protein binding