collagen, type III, alpha 1

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Synonym

COL3A1, EDS4A, Collagen alpha-1(III) chain precursor

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

nodata

GeneChip

cerebrum:4.31

cerebellum:4.22

brain stem:4.47

corpus callosum/glia:4.23

pineal gland:-

peripheral nerve:9.34

spine:5.49

retina:-

eye:-

artery/aorta:10.26

vein:11.20

lymphnode:8.53

peripheral blood:-

spleen:9.85

thymus:7.74

bone marrow:6.11

adipose:11.31

bone:-

skin:10.16

CAGE

cerebrum:0.69

cerebellum:-

brain stem:1.38

corpus callosum/glia:1.38

pineal gland:2.90

peripheral nerve:-

spine:1.73

retina:-

eye:-

artery/aorta:5.84

vein:5.61

lymphnode:4.70

peripheral blood:-

spleen:4.90

thymus:3.56

bone marrow:-

adipose:5.26

bone:-

skin:-

RNA-seq

cerebrum:0.50

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:5.93

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:5.27

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

nodata

GeneChip

uterus:12.50

placenta:11.60

prostate:9.27

ovary:10.90

testis:7.78

heart:9.57

muscle:8.08

esophagus:9.35

stomach:10.78

intestine:10.99

colon:10.83

liver/hepato:8.01

lung:8.67

bladder:-

kidney:7.33

pituitary:5.88

thyroid/parathyroid:8.38

adrenal gland:8.29

pancreas:8.32

breast:10.78

salivary:7.34

CAGE

uterus:7.15

placenta:6.53

prostate:4.89

ovary:5.53

testis:4.85

heart:4.92

muscle:3.48

esophagus:4.97

stomach:-

intestine:4.67

colon:5.34

liver/hepato:3.81

lung:4.80

bladder:5.46

kidney:4.14

pituitary:1.75

thyroid/parathyroid:3.35

adrenal gland:-

pancreas:4.06

breast:4.56

salivary:3.85

RNA-seq

uterus:-

placenta:-

prostate:5.99

ovary:7.49

testis:6.49

heart:4.66

muscle:1.41

esophagus:-

stomach:-

intestine:-

colon:6.15

liver/hepato:4.56

lung:5.33

bladder:-

kidney:5.35

pituitary:-

thyroid/parathyroid:4.66

adrenal gland:6.72

pancreas:-

breast:8.53

salivary:-

IDs

Refseq ID	NM_000090
Gene ID	1281
Unigene ID	-
Probe set ID	201852_x_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000168542
GTEx ID	ENSG00000168542

Orthologous Gene

Mouse[2]	NM_009930
Rat [0]

Chromosomal Region

2q32.2 [189,839,046 - 189,877,472]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

LRG_3 [5,001 - 43,374]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

Gene Ontology (GO ID)

Biological Process

GO:0007411	axon guidance
GO:0001568	blood vessel development
GO:0007160	cell-matrix adhesion
GO:0071230	cellular response to amino acid stimulus
GO:0021987	cerebral cortex development
GO:0032964	collagen biosynthetic process
GO:0030574	collagen catabolic process
GO:0030199	collagen fibril organization
GO:0022617	extracellular matrix disassembly
GO:0030198	extracellular matrix organization
GO:0043206	fibril organization
GO:0048565	gut development
GO:0007507	heart development
GO:0007229	integrin-mediated signaling pathway
GO:0050777	negative regulation of immune response
GO:0018149	peptide cross-linking
GO:0030168	platelet activation
GO:0035025	positive regulation of Rho protein signal transduction
GO:0034097	response to cytokine stimulus
GO:0009314	response to radiation
GO:0001501	skeletal system development
GO:0043588	skin development
GO:0007179	transforming growth factor beta receptor signaling pathway
GO:0042060	wound healing

Cellular Component

GO:0005586	collagen type III
GO:0005788	endoplasmic reticulum lumen
GO:0031012	extracellular matrix
GO:0005576	extracellular region
GO:0005615	extracellular space

Molecular Function

GO:0005201	extracellular matrix structural constituent
GO:0005178	integrin binding
GO:0046872	metal ion binding
GO:0048407	platelet-derived growth factor binding
GO:0005515	protein binding
GO:0046332	SMAD binding

collagen, type III, alpha 1

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function