collagen, type IV, alpha 2

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Synonym

FLJ22259, DKFZp686I14213, COL4A2, collagen, type IV, alpha 2, Collagen alpha-2(IV) chain precursor

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:33.20

cerebellum:-

brain stem:-

corpus callosum/glia:29.20

pineal gland:-

peripheral nerve:398.70

spine:898.40

retina:-

eye:282.10

artery/aorta:60

vein:-

lymphnode:-

peripheral blood:-

spleen:264.70

thymus:12.90

bone marrow:196.80

adipose:564.70

bone:140.70

skin:115.20

GeneChip

cerebrum:6

cerebellum:5.94

brain stem:6.12

corpus callosum/glia:5.37

pineal gland:-

peripheral nerve:9.40

spine:5.96

retina:-

eye:-

artery/aorta:11.36

vein:10.75

lymphnode:8.31

peripheral blood:-

spleen:10.25

thymus:6.46

bone marrow:5.90

adipose:10.71

bone:-

skin:9.12

CAGE

cerebrum:2.38

cerebellum:-

brain stem:2.80

corpus callosum/glia:2.29

pineal gland:3.01

peripheral nerve:-

spine:2.85

retina:-

eye:-

artery/aorta:6.21

vein:4.82

lymphnode:3.80

peripheral blood:-

spleen:5.54

thymus:2.84

bone marrow:-

adipose:5.98

bone:-

skin:-

RNA-seq

cerebrum:2.12

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:5.18

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:7.34

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:401

placenta:488.20

prostate:259.10

ovary:335.40

testis:47.60

heart:357.60

muscle:60.30

esophagus:-

stomach:106.20

intestine:97.20

colon:237.40

liver/hepato:95

lung:215.10

bladder:-

kidney:104

pituitary:-

thyroid/parathyroid:491.20

adrenal gland:304.70

pancreas:160

breast:260.20

salivary:-

GeneChip

uterus:10.62

placenta:11.44

prostate:9.39

ovary:9.68

testis:7.61

heart:9.72

muscle:7.49

esophagus:7.94

stomach:9.81

intestine:9.83

colon:10.09

liver/hepato:7.32

lung:10.48

bladder:-

kidney:9.21

pituitary:6.54

thyroid/parathyroid:9.48

adrenal gland:9.22

pancreas:7.97

breast:9.99

salivary:8

CAGE

uterus:5.31

placenta:6.23

prostate:4.86

ovary:4.75

testis:3.89

heart:5.05

muscle:4.53

esophagus:4.64

stomach:-

intestine:4.74

colon:5.18

liver/hepato:3.59

lung:4.98

bladder:5.68

kidney:4.40

pituitary:2.21

thyroid/parathyroid:4.18

adrenal gland:-

pancreas:3.54

breast:5.47

salivary:3.40

RNA-seq

uterus:-

placenta:-

prostate:5.81

ovary:4.71

testis:5.38

heart:4.36

muscle:3.34

esophagus:-

stomach:-

intestine:-

colon:6.44

liver/hepato:2.30

lung:6.83

bladder:-

kidney:5.12

pituitary:-

thyroid/parathyroid:4.52

adrenal gland:5.88

pancreas:-

breast:6.71

salivary:-

IDs

Refseq ID	NM_001846
Gene ID	1284
Unigene ID	Hs.508716
Probe set ID	211964_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000134871
GTEx ID	ENSG00000134871

Orthologous Gene

Mouse[1]	NM_009932
Rat[1]	NM_009932

Chromosomal Region

13q34 [110,958,159 - 111,165,374]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

GO:0001525	angiogenesis
GO:0007411	axon guidance
GO:0030574	collagen catabolic process
GO:0022617	extracellular matrix disassembly
GO:0030198	extracellular matrix organization
GO:0016525	negative regulation of angiogenesis
GO:0006351	transcription, DNA-dependent

Cellular Component

GO:0005587	collagen type IV
GO:0005788	endoplasmic reticulum lumen
GO:0031012	extracellular matrix
GO:0005576	extracellular region

Molecular Function

GO:0005201	extracellular matrix structural constituent
GO:0005515	protein binding

collagen, type IV, alpha 2

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function