collagen, type VI, alpha 6

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Synonym

-

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:3.60 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:118.60 eye:29.40 artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:19.20
GeneChip nodata
CAGE nodata
RNA-seq cerebrum:0.05 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0.09 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0.26 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:3.60 prostate:- ovary:- testis:- heart:- muscle:- esophagus:- stomach:42.50 intestine:- colon:-     liver/hepato:-        lung:14.70    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:44.50 breast:9.30 salivary:-
GeneChip nodata
CAGE nodata
RNA-seq uterus:- placenta:- prostate:0.15 ovary:0.23 testis:0.25 heart:0.94 muscle:0.01 esophagus:- stomach:- intestine:- colon:0.00     liver/hepato:0.04        lung:3.07    bladder:- kidney:0.07 pituitary:- thyroid/parathyroid:0.16 adrenal gland:0.07 pancreas:- breast:0.97 salivary:-

Gene Information

IDs

Refseq ID NM_001102608
Gene ID 131873
Unigene ID Hs.591282
Probe set ID -
Ensembl ID ENSG00000206384
GTEx ID ENSG00000206384

Orthologous Gene

Mouse[2]  NM_001102607, NM_172927
Rat[2]  NM_001102607, NM_172927

Chromosomal Region

3q22.1  [130,279,178  -  130,395,888]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

16641997
18276594
18400749
20882040
21406227
22226732

Gene Ontology  (GO ID)

Biological Process

GO:0007155  cell adhesion
GO:0030574  collagen catabolic process
GO:0022617  extracellular matrix disassembly
GO:0030198  extracellular matrix organization

Cellular Component

GO:0005581  collagen
GO:0031012  extracellular matrix
GO:0005576  extracellular region