LysM, putative peptidoglycan-binding, domain containing 4

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Synonym

MGC99501, LYSMD4, FLJ33008

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:35.60 cerebellum:25.20 brain stem:- corpus callosum/glia:29.20 pineal gland:- peripheral nerve:30.70 spine:- retina:- eye:23.50 artery/aorta:- vein:- lymphnode:20.20 peripheral blood:18.20 spleen:18.90 thymus:38.70 bone marrow:- adipose:- bone:38.40 skin:9.60
GeneChip nodata
CAGE cerebrum:2.07 cerebellum:- brain stem:1.76 corpus callosum/glia:2.14 pineal gland:2.19 peripheral nerve:- spine:2.17 retina:- eye:- artery/aorta:1.94 vein:1.73 lymphnode:1.45 peripheral blood:- spleen:1.12 thymus:1.60 bone marrow:- adipose:2.14 bone:- skin:-
RNA-seq cerebrum:1.05 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:1.19 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:1.38 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:63.80 placenta:32.80 prostate:- ovary:- testis:13 heart:25.50 muscle:- esophagus:- stomach:21.20 intestine:- colon:25.40     liver/hepato:10.60        lung:29.30    bladder:- kidney:10.40 pituitary:- thyroid/parathyroid:- adrenal gland:101.60 pancreas:8.90 breast:9.30 salivary:-
GeneChip nodata
CAGE uterus:2.03 placenta:0.81 prostate:1.38 ovary:1.35 testis:1.87 heart:1.88 muscle:1.61 esophagus:2.12 stomach:- intestine:1.89 colon:1.42     liver/hepato:1.37    lung:1.83 bladder:1.49 kidney:1.24 pituitary:1.72 thyroid/parathyroid:1.27 adrenal gland:- pancreas:1.59 breast:2.34 salivary:2.78
RNA-seq uterus:- placenta:- prostate:1.61 ovary:1.48 testis:1.84 heart:1.08 muscle:1.29 esophagus:- stomach:- intestine:- colon:1.28     liver/hepato:1.14        lung:1.27    bladder:- kidney:1.33 pituitary:- thyroid/parathyroid:1.25 adrenal gland:1.30 pancreas:- breast:1.48 salivary:-

Gene Information

IDs

Refseq ID NM_152449
Gene ID 145748
Unigene ID Hs.562568
Probe set ID -
Ensembl ID ENSG00000183060
GTEx ID ENSG00000183060

Orthologous Gene

Mouse[1]  NM_001191051, NM_175215
Rat[1]  NM_001191051, NM_175215

Chromosomal Region

15q26.3  [100,255,906  -  100,273,766]

Gene Family (Interpro ID)

IPR018392  Peptidoglycan-binding lysin domain
IPR002482  Peptidoglycan-binding Lysin subgroup

Link to Pubmed  (Pubmed ID)

12477932
14702039
15489334
16344560
20379614
23377640
23870195

Gene Ontology  (GO ID)

Biological Process

GO:0016998  cell wall macromolecule catabolic process

Cellular Component

GO:0016021  integral to membrane