versican

Synonym

GHAP, DKFZp686K06110, Chondroitin sulfate proteoglycan core protein 2, VERSICAN, chondroitin sulfate proteoglycan 2 (versican), Versican core protein precursor, Large fibroblast proteoglycan, PG-M, Glial hyaluronate-binding protein, CSPG2

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

nodata

GeneChip

cerebrum:7.87

cerebellum:7.65

brain stem:7.80

corpus callosum/glia:9.30

pineal gland:-

peripheral nerve:7.58

spine:9.43

retina:-

eye:-

artery/aorta:10.25

vein:9.65

lymphnode:6.80

peripheral blood:-

spleen:7.28

thymus:5.95

bone marrow:9.53

adipose:8.14

bone:-

skin:8.25

CAGE

cerebrum:3.79

cerebellum:-

brain stem:3.89

corpus callosum/glia:4.47

pineal gland:2.91

peripheral nerve:-

spine:4.51

retina:-

eye:-

artery/aorta:6.01

vein:3.93

lymphnode:3.35

peripheral blood:-

spleen:4.44

thymus:2.15

bone marrow:-

adipose:4.82

bone:-

skin:-

RNA-seq

cerebrum:1.46

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:2.93

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:3.82

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

nodata

GeneChip

uterus:9.66

placenta:9.32

prostate:6.83

ovary:7.73

testis:6.47

heart:8.74

muscle:6.34

esophagus:7.68

stomach:8.44

intestine:8.32

colon:7.40

liver/hepato:5.53

lung:8.66

bladder:-

kidney:5.55

pituitary:5.26

thyroid/parathyroid:6.89

adrenal gland:10.13

pancreas:7

breast:8.93

salivary:5.85

CAGE

uterus:4.24

placenta:5.00

prostate:3.84

ovary:3.34

testis:3.39

heart:5.20

muscle:3.37

esophagus:3.78

stomach:-

intestine:2.81

colon:3.28

liver/hepato:2.14

lung:4.42

bladder:4.72

kidney:3.05

pituitary:1.90

thyroid/parathyroid:3.24

adrenal gland:-

pancreas:2.41

breast:4.05

salivary:1.82

RNA-seq

uterus:-

placenta:-

prostate:2.64

ovary:1.91

testis:2.95

heart:2.99

muscle:0.67

esophagus:-

stomach:-

intestine:-

colon:3.66

liver/hepato:0.86

lung:3.70

bladder:-

kidney:2.11

pituitary:-

thyroid/parathyroid:1.71

adrenal gland:2.27

pancreas:-

breast:2.87

salivary:-

IDs

Refseq ID	NM_001164097
Gene ID	1462
Unigene ID	-
Probe set ID	204620_s_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000038427
GTEx ID	ENSG00000038427

Orthologous Gene

Mouse[20]	NM_001081249, NM_001134474, NM_001134475, NM_019389, NM_172955
Rat [0]

Chromosomal Region

5q14.2 [82,767,284 - 82,878,122]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

IPR001304	C-type lectin
IPR016187	C-type lectin fold
IPR016186	C-type lectin-like
IPR001881	EGF-like calcium-binding
IPR000742	EGF-like, type 3
IPR000538	Link
IPR000436	Sushi/SCR/CCP

Gene Ontology (GO ID)

Biological Process

GO:0005975	carbohydrate metabolic process
GO:0007155	cell adhesion
GO:0008037	cell recognition
GO:0030206	chondroitin sulfate biosynthetic process
GO:0030207	chondroitin sulfate catabolic process
GO:0030204	chondroitin sulfate metabolic process
GO:0030208	dermatan sulfate biosynthetic process
GO:0030198	extracellular matrix organization
GO:0008347	glial cell migration
GO:0030203	glycosaminoglycan metabolic process
GO:0007507	heart development
GO:0007275	multicellular organismal development

Cellular Component

GO:0031012	extracellular matrix
GO:0005576	extracellular region
GO:0005615	extracellular space
GO:0005796	Golgi lumen
GO:0043202	lysosomal lumen
GO:0005578	proteinaceous extracellular matrix

Molecular Function

GO:0005509	calcium ion binding
GO:0030246	carbohydrate binding
GO:0005539	glycosaminoglycan binding
GO:0005540	hyaluronic acid binding

versican

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function