collagen, type XXII, alpha 1

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Synonym

collagen, type XXII, alpha 1, COL22A1

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:7.10 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:118.60 eye:29.40 artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:25.80 bone marrow:- adipose:- bone:- skin:-
GeneChip nodata
CAGE cerebrum:0.41 cerebellum:- brain stem:0.19 corpus callosum/glia:0.94 pineal gland:0.21 peripheral nerve:- spine:0.95 retina:- eye:- artery/aorta:0.18 vein:0.47 lymphnode:0.50 peripheral blood:- spleen:0.25 thymus:0.80 bone marrow:- adipose:0 bone:- skin:-
RNA-seq cerebrum:0.03 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0.02 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0.00 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:- prostate:22.50 ovary:- testis:13 heart:25.50 muscle:- esophagus:- stomach:- intestine:- colon:-     liver/hepato:-        lung:4.90    bladder:- kidney:- pituitary:232 thyroid/parathyroid:- adrenal gland:- pancreas:- breast:18.60 salivary:-
GeneChip nodata
CAGE uterus:1.07 placenta:0 prostate:0.85 ovary:0.14 testis:0.59 heart:0.16 muscle:0.09 esophagus:0.09 stomach:- intestine:0.07 colon:0.55     liver/hepato:0    lung:0 bladder:0 kidney:0.49 pituitary:3.78 thyroid/parathyroid:0.12 adrenal gland:- pancreas:0 breast:0 salivary:0.83
RNA-seq uterus:- placenta:- prostate:0.14 ovary:0.09 testis:0.32 heart:0.03 muscle:0 esophagus:- stomach:- intestine:- colon:0.06     liver/hepato:0        lung:0.05    bladder:- kidney:0.04 pituitary:- thyroid/parathyroid:0.06 adrenal gland:0.02 pancreas:- breast:0.21 salivary:-

Gene Information

IDs

Refseq ID NM_152888
Gene ID 169044
Unigene ID Hs.117169
Probe set ID -
Ensembl ID ENSG00000169436
GTEx ID ENSG00000169436

Orthologous Gene

Mouse[2]  NM_027174
Rat[2]  NM_027174

Chromosomal Region

8q24.3  [139,600,478  -  139,926,249]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

12477932
15016833
20222955
20379614
23508266
24428702

Gene Ontology  (GO ID)

Biological Process

GO:0030198  extracellular matrix organization

Cellular Component

GO:0005581  collagen
GO:0005788  endoplasmic reticulum lumen
GO:0005576  extracellular region