nuclear cap binding protein subunit 2, 20kDa

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Synonym

NCBP-interacting protein 1, Cell proliferation-inducing gene 55 protein, PIG55, NCBP 20 kDa subunit, nuclear cap binding protein subunit 2, 20kDa, Nuclear cap-binding protein subunit 2, CBP20, NCBP2, 20 kDa nuclear cap-binding protein, CBC2

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:96 cerebellum:75.60 brain stem:- corpus callosum/glia:87.50 pineal gland:- peripheral nerve:153.40 spine:- retina:- eye:58.80 artery/aorta:449.60 vein:133.30 lymphnode:60.70 peripheral blood:127.50 spleen:226.90 thymus:231.90 bone marrow:78.70 adipose:161.30 bone:76.80 skin:96
GeneChip cerebrum:6.86 cerebellum:6.74 brain stem:6.83 corpus callosum/glia:6.87 pineal gland:- peripheral nerve:6.55 spine:7.33 retina:- eye:- artery/aorta:6.58 vein:6.56 lymphnode:7.04 peripheral blood:- spleen:7.04 thymus:7.67 bone marrow:6.23 adipose:6.94 bone:- skin:6.82
CAGE cerebrum:4.07 cerebellum:- brain stem:3.95 corpus callosum/glia:3.54 pineal gland:4.87 peripheral nerve:- spine:4.41 retina:- eye:- artery/aorta:3.84 vein:3.84 lymphnode:3.90 peripheral blood:- spleen:3.82 thymus:3.66 bone marrow:- adipose:3.58 bone:- skin:-
RNA-seq cerebrum:0.14 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:3.14 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0.56 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:154.90 placenta:43.70 prostate:112.60 ovary:- testis:86.50 heart:102.20 muscle:- esophagus:342.80 stomach:85 intestine:194.40 colon:50.90     liver/hepato:31.70        lung:92.90    bladder:502.40 kidney:62.40 pituitary:116 thyroid/parathyroid:163.70 adrenal gland:50.80 pancreas:17.80 breast:9.30 salivary:-
GeneChip uterus:7.25 placenta:6.37 prostate:7.34 ovary:7.31 testis:6.57 heart:6.58 muscle:6.62 esophagus:6.59 stomach:6.69 intestine:6.65 colon:6.40 liver/hepato:6.20 lung:6.78 bladder:- kidney:6.64 pituitary:6.90 thyroid/parathyroid:7.16 adrenal gland:6.91 pancreas:6.48 breast:6.97 salivary:6.27
CAGE uterus:3.61 placenta:3.40 prostate:3.72 ovary:3.76 testis:3.69 heart:3.95 muscle:4.01 esophagus:3.69 stomach:- intestine:3.42 colon:3.59     liver/hepato:3.38    lung:3.62 bladder:3.85 kidney:3.85 pituitary:4.15 thyroid/parathyroid:3.88 adrenal gland:- pancreas:3.90 breast:4.25 salivary:3.37
RNA-seq uterus:- placenta:- prostate:1.95 ovary:3.13 testis:1.37 heart:0.00 muscle:0.00 esophagus:- stomach:- intestine:- colon:2.78     liver/hepato:0.81        lung:1.27    bladder:- kidney:2.86 pituitary:- thyroid/parathyroid:0.97 adrenal gland:2.80 pancreas:- breast:1.71 salivary:-

Gene Information

IDs

Refseq ID NM_001042540
Gene ID 22916
Unigene ID Hs.591671
Probe set ID 201517_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000114503
GTEx ID ENSG00000114503

Orthologous Gene

Mouse[3]  NM_026554
Rat[1]  NM_001109525

Chromosomal Region

3q29  [196,662,273  -  196,669,468]

Gene Family (Interpro ID)

IPR000504  RNA recognition motif, RNP-1

Link to Pubmed  (Pubmed ID)

7478990
7651522
8069914
8601613
8682299
9049306
9111328
9342333
9409616
9933612
10786834
11331597
11333016
11545740
11551508
12093754
12226669
12374755
12434151
12477932
12676794
14702039
15040442
15130578
15146197
15342556
15361857
15489334
15574332
16452507
17190602
17332742
17499042
17873884
18029348
18369367
18426921
19417104
19648179
19668212
21139048
21145461
21326824
21890473
21906983
22365833
22505724
22939629
23000965
24457600
24778252
24816145

Gene Ontology  (GO ID)

Biological Process

GO:0010467  gene expression
GO:0031047  gene silencing by RNA
GO:0008334  histone mRNA metabolic process
GO:0031124  mRNA 3'-end processing
GO:0006370  mRNA capping
GO:0006406  mRNA export from nucleus
GO:0016071  mRNA metabolic process
GO:0034660  ncRNA metabolic process
GO:0045292  nuclear mRNA cis splicing, via spliceosome
GO:0000398  nuclear mRNA splicing, via spliceosome
GO:0000184  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0046833  positive regulation of RNA export from nucleus
GO:0050434  positive regulation of viral transcription
GO:0006446  regulation of translational initiation
GO:0006368  RNA elongation from RNA polymerase II promoter
GO:0016070  RNA metabolic process
GO:0008380  RNA splicing
GO:0006408  snRNA export from nucleus
GO:0000387  spliceosomal snRNP assembly
GO:0006369  termination of RNA polymerase II transcription
GO:0006366  transcription from RNA polymerase II promoter
GO:0016032  viral reproduction

Cellular Component

GO:0005737  cytoplasm
GO:0005829  cytosol
GO:0005845  mRNA cap binding complex
GO:0005846  nuclear cap binding complex
GO:0005730  nucleolus
GO:0005654  nucleoplasm
GO:0005634  nucleus

Molecular Function

GO:0000166  nucleotide binding
GO:0005515  protein binding
GO:0000340  RNA 7-methylguanosine cap binding
GO:0003723  RNA binding
GO:0000339  RNA cap binding