LIM and calponin homology domains 1

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Synonym

DKFZp781I1455, DKFZp686G18243, DKFZp781C1754, DKFZp686G2094, DKFZp686B2470, MGC72127, DKFZp686A01247, DKFZp434I0312, DKFZP686A01247

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:167.10 cerebellum:88.20 brain stem:- corpus callosum/glia:87.50 pineal gland:- peripheral nerve:276 spine:112.30 retina:355.90 eye:241 artery/aorta:- vein:199.90 lymphnode:- peripheral blood:- spleen:56.70 thymus:25.80 bone marrow:- adipose:121 bone:102.40 skin:100.80
GeneChip cerebrum:8.91 cerebellum:8.29 brain stem:9.04 corpus callosum/glia:9.85 pineal gland:- peripheral nerve:8.46 spine:9.44 retina:- eye:- artery/aorta:8.09 vein:8.01 lymphnode:5.57 peripheral blood:- spleen:9.59 thymus:5.21 bone marrow:4.38 adipose:7.76 bone:- skin:6.84
CAGE cerebrum:4.71 cerebellum:- brain stem:5.07 corpus callosum/glia:5.15 pineal gland:3.37 peripheral nerve:- spine:5.27 retina:- eye:- artery/aorta:5.08 vein:3.18 lymphnode:2.63 peripheral blood:- spleen:4.91 thymus:1.78 bone marrow:- adipose:4.07 bone:- skin:-
RNA-seq cerebrum:0.00 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0.00 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0.33 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:63.80 placenta:149.40 prostate:169 ovary:74.50 testis:99.50 heart:114.90 muscle:140.60 esophagus:- stomach:42.50 intestine:64.80 colon:-     liver/hepato:285        lung:180.80    bladder:- kidney:93.60 pituitary:116 thyroid/parathyroid:- adrenal gland:- pancreas:133.40 breast:204.40 salivary:-
GeneChip uterus:6.16 placenta:8.51 prostate:8.86 ovary:7.34 testis:4.85 heart:8.33 muscle:8.68 esophagus:7.10 stomach:6.40 intestine:6.77 colon:5.74 liver/hepato:6.10 lung:10.03 bladder:- kidney:7.26 pituitary:7.73 thyroid/parathyroid:8.58 adrenal gland:8.25 pancreas:5.39 breast:7.31 salivary:8.77
CAGE uterus:2.91 placenta:4.44 prostate:4.07 ovary:2.98 testis:2.37 heart:4.97 muscle:5.05 esophagus:3.39 stomach:- intestine:2.34 colon:2.82     liver/hepato:3.35    lung:5.21 bladder:3.63 kidney:3.65 pituitary:3.79 thyroid/parathyroid:4.44 adrenal gland:- pancreas:2.26 breast:3.90 salivary:4.53
RNA-seq uterus:- placenta:- prostate:0.00 ovary:0.00 testis:0.00 heart:0 muscle:0.00 esophagus:- stomach:- intestine:- colon:0.11     liver/hepato:0.00        lung:0    bladder:- kidney:0.00 pituitary:- thyroid/parathyroid:0.00 adrenal gland:0.00 pancreas:- breast:0.00 salivary:-

Gene Information

IDs

Refseq ID NM_001112717
Gene ID 22998
Unigene ID Hs.335163
Probe set ID 212327_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000064042
GTEx ID ENSG00000064042

Orthologous Gene

Mouse[2]  NM_001001980
Rat [0]  

Chromosomal Region

4p13  [41,361,624  -  41,702,061]

Gene Family (Interpro ID)

IPR001997  Calponin
IPR016146  Calponin-homology
IPR001715  Calponin-like actin-binding
IPR003096  SM22/calponin

Link to Pubmed  (Pubmed ID)

9847074
10470851
11076863
11230166
11256614
12477932
15302935
15489336
16344560
16381901
19322201
19531213
20379614
21832049
22863883
22939629
23793025
24332808

Gene Ontology  (GO ID)

Biological Process

GO:0031032  actomyosin structure organization

Molecular Function

GO:0003779  actin binding
GO:0008270  zinc ion binding