chromobox homolog 6

 jump to detail

Synonym

CBX6, Chromobox protein homolog 6, chromobox homolog 6

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:45 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:92 spine:224.60 retina:- eye:99.90 artery/aorta:- vein:- lymphnode:50.60 peripheral blood:36.40 spleen:94.50 thymus:- bone marrow:- adipose:40.30 bone:- skin:28.80
GeneChip cerebrum:8.50 cerebellum:8.37 brain stem:8.09 corpus callosum/glia:8.03 pineal gland:- peripheral nerve:7.90 spine:7.95 retina:- eye:- artery/aorta:8.40 vein:8.53 lymphnode:7.96 peripheral blood:- spleen:7.58 thymus:7.66 bone marrow:7.49 adipose:7.84 bone:- skin:7.62
CAGE cerebrum:5.03 cerebellum:- brain stem:4.73 corpus callosum/glia:4.84 pineal gland:3.45 peripheral nerve:- spine:4.01 retina:- eye:- artery/aorta:4.76 vein:4.33 lymphnode:4.30 peripheral blood:- spleen:4.49 thymus:4.39 bone marrow:- adipose:4.18 bone:- skin:-
RNA-seq cerebrum:3.23 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:3.14 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:3.06 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:27.30 placenta:7.30 prostate:11.30 ovary:- testis:- heart:- muscle:- esophagus:- stomach:- intestine:- colon:17     liver/hepato:10.60        lung:14.70    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:35.60 breast:9.30 salivary:-
GeneChip uterus:7.92 placenta:7.65 prostate:7.93 ovary:7.94 testis:7.09 heart:7.51 muscle:7.53 esophagus:7.79 stomach:7.86 intestine:7.91 colon:7.80 liver/hepato:7.20 lung:7.66 bladder:- kidney:7.96 pituitary:8.43 thyroid/parathyroid:8.24 adrenal gland:7.94 pancreas:8.38 breast:7.92 salivary:7.81
CAGE uterus:4.85 placenta:3.68 prostate:4.72 ovary:5.17 testis:3.97 heart:3.81 muscle:3.36 esophagus:4.47 stomach:- intestine:3.72 colon:4.06     liver/hepato:3.80    lung:3.88 bladder:4.89 kidney:4.56 pituitary:4.47 thyroid/parathyroid:4.41 adrenal gland:- pancreas:3.69 breast:3.16 salivary:4.32
RNA-seq uterus:- placenta:- prostate:3.18 ovary:4.07 testis:2.39 heart:1.92 muscle:1.35 esophagus:- stomach:- intestine:- colon:2.61     liver/hepato:1.52        lung:2.55    bladder:- kidney:2.93 pituitary:- thyroid/parathyroid:3.79 adrenal gland:3.21 pancreas:- breast:2.33 salivary:-

Gene Information

IDs

Refseq ID NM_014292
Gene ID 23466
Unigene ID Hs.592201
Probe set ID 202048_s_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000183741
GTEx ID ENSG00000183741

Orthologous Gene

Mouse[1]  NM_028763
Rat[1]  NM_028763

Chromosomal Region

22q13.1  [39,257,455  -  39,268,319]

Gene Family (Interpro ID)

IPR000953  Chromo domain
IPR017984  Chromo domain subgroup

Link to Pubmed  (Pubmed ID)

10591208
12477932
14702039
15203218
15489334
19322201
20211142
20972438
21047797
21139048
21282530
21890473
21906983
22325352
23000965
23503679
24163127
24457600

Gene Ontology  (GO ID)

Biological Process

GO:0016568  chromatin modification
GO:0000122  negative regulation of transcription from RNA polymerase II promoter
GO:0006351  transcription, DNA-dependent

Cellular Component

GO:0000792  heterochromatin
GO:0005634  nucleus
GO:0031519  PcG protein complex

Molecular Function

GO:0005515  protein binding
GO:0003727  single-stranded RNA binding