PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)

Synonym

ANT-1, bB152O15.1, hPrp6, chromosome 20 open reading frame 14, U5 snRNP-associated 102 kDa protein, U5-102K, PRPF6, U5-102 kDa protein, TOM, C20orf14, Pre-mRNA-processing factor 6 homolog

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:4.70

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:-

peripheral blood:109.30

spleen:37.80

thymus:-

bone marrow:-

adipose:-

bone:12.80

skin:-

GeneChip

cerebrum:7.78

cerebellum:8.25

brain stem:7.78

corpus callosum/glia:7.87

pineal gland:-

peripheral nerve:7.82

spine:7.68

retina:-

eye:-

artery/aorta:8.07

vein:7.86

lymphnode:7.90

peripheral blood:-

spleen:7.82

thymus:8.05

bone marrow:7.67

adipose:7.80

bone:-

skin:8.17

CAGE

cerebrum:4.70

cerebellum:-

brain stem:4.48

corpus callosum/glia:4.89

pineal gland:4.55

peripheral nerve:-

spine:4.52

retina:-

eye:-

artery/aorta:4.64

vein:4.60

lymphnode:4.52

peripheral blood:-

spleen:4.44

thymus:4.69

bone marrow:-

adipose:4.35

bone:-

skin:-

RNA-seq

cerebrum:4.36

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:4.28

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:4.94

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:-

placenta:-

prostate:-

ovary:-

testis:-

heart:-

muscle:-

esophagus:-

stomach:-

intestine:-

colon:8.50

liver/hepato:-

lung:-

bladder:-

kidney:-

pituitary:-

thyroid/parathyroid:-

adrenal gland:-

pancreas:-

breast:-

salivary:-

GeneChip

uterus:7.76

placenta:7.28

prostate:8.01

ovary:8.19

testis:8.40

heart:7.31

muscle:7.75

esophagus:8.01

stomach:7.61

intestine:7.50

colon:7.56

liver/hepato:7.39

lung:7.84

bladder:-

kidney:7.71

pituitary:8

thyroid/parathyroid:8.07

adrenal gland:7.66

pancreas:7.46

breast:8.23

salivary:7.58

CAGE

uterus:4.66

placenta:4.40

prostate:4.50

ovary:4.72

testis:4.80

heart:4.33

muscle:4.77

esophagus:4.26

stomach:-

intestine:4.36

colon:4.33

liver/hepato:3.99

lung:4.24

bladder:4.49

kidney:4.31

pituitary:4.59

thyroid/parathyroid:4.33

adrenal gland:-

pancreas:4.41

breast:4.27

salivary:4.40

RNA-seq

uterus:-

placenta:-

prostate:4.96

ovary:5.29

testis:5.45

heart:3.41

muscle:5.05

esophagus:-

stomach:-

intestine:-

colon:4.46

liver/hepato:3.24

lung:3.90

bladder:-

kidney:4.29

pituitary:-

thyroid/parathyroid:5.19

adrenal gland:4.55

pancreas:-

breast:4.71

salivary:-

IDs

Refseq ID	NM_012469
Gene ID	24148
Unigene ID	Hs.313343
Probe set ID	208880_s_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000101161
GTEx ID	ENSG00000101161

Orthologous Gene

Mouse[2]	NM_133701
Rat[1]	NM_001079766

Chromosomal Region

20q13.33 [62,612,488 - 62,664,453]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

IPR019734

Tetratricopeptide repeat

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

GO:0000244	assembly of spliceosomal tri-snRNP
GO:0010467	gene expression
GO:0000398	nuclear mRNA splicing, via spliceosome
GO:0045944	positive regulation of transcription from RNA polymerase II promoter
GO:0006403	RNA localization
GO:0008380	RNA splicing
GO:0000375	RNA splicing, via transesterification reactions
GO:0000245	spliceosome assembly

Cellular Component

GO:0071013	catalytic step 2 spliceosome
GO:0016607	nuclear speck
GO:0005654	nucleoplasm
GO:0005634	nucleus
GO:0005681	spliceosomal complex
GO:0071001	U4/U6 snRNP
GO:0046540	U4/U6 x U5 tri-snRNP complex
GO:0005682	U5 snRNP

Molecular Function

GO:0050681	androgen receptor binding
GO:0005515	protein binding
GO:0043021	ribonucleoprotein binding
GO:0003723	RNA binding
GO:0003713	transcription coactivator activity

PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function