LSM14A, SCD6 homolog A (S. cerevisiae)

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Synonym

AlphaSNBP, Protein FAM61A, LSM14 homolog A (SCD6, S. cerevisiae), chromosome 19 open reading frame 13, RAP55, Putative alpha synuclein-binding protein, C19orf13, FAM61A, LSM14A, DKFZP434D1335

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST nodata
GeneChip cerebrum:6.20 cerebellum:7.26 brain stem:6.12 corpus callosum/glia:6.75 pineal gland:- peripheral nerve:6.50 spine:6.33 retina:- eye:- artery/aorta:7.01 vein:6.97 lymphnode:7.29 peripheral blood:- spleen:7.47 thymus:8.07 bone marrow:6.83 adipose:6.91 bone:- skin:7.45
CAGE cerebrum:4.32 cerebellum:- brain stem:4.20 corpus callosum/glia:4.31 pineal gland:5.14 peripheral nerve:- spine:4.65 retina:- eye:- artery/aorta:4.55 vein:4.39 lymphnode:4.53 peripheral blood:- spleen:4.32 thymus:4.81 bone marrow:- adipose:4.22 bone:- skin:-
RNA-seq cerebrum:3.75 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:4.80 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:4.20 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST nodata
GeneChip uterus:7.79 placenta:7.75 prostate:7.91 ovary:7.94 testis:6.58 heart:6.50 muscle:7.81 esophagus:6.86 stomach:6.67 intestine:7.01 colon:6.34 liver/hepato:6.55 lung:7.21 bladder:- kidney:6.68 pituitary:6.60 thyroid/parathyroid:7.66 adrenal gland:7.05 pancreas:5.83 breast:7.57 salivary:6.20
CAGE uterus:4.31 placenta:4.79 prostate:4.36 ovary:4.48 testis:4.29 heart:4.42 muscle:4.80 esophagus:4.28 stomach:- intestine:4.49 colon:4.57     liver/hepato:4.09    lung:4.49 bladder:4.51 kidney:4.34 pituitary:4.25 thyroid/parathyroid:4.41 adrenal gland:- pancreas:3.95 breast:4.61 salivary:3.58
RNA-seq uterus:- placenta:- prostate:4.60 ovary:5.24 testis:5.21 heart:3.83 muscle:4.15 esophagus:- stomach:- intestine:- colon:4.94     liver/hepato:3.50        lung:4.53    bladder:- kidney:4.60 pituitary:- thyroid/parathyroid:4.94 adrenal gland:4.27 pancreas:- breast:4.10 salivary:-

Gene Information

IDs

Refseq ID NM_015578
Gene ID 26065
Unigene ID -
Probe set ID 212131_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000257103
GTEx ID ENSG00000257103

Orthologous Gene

Mouse[1]  NM_025948
Rat [0]  

Chromosomal Region

19q13.11  [34,663,352  -  34,720,420]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

12477932
14702039
15489334
15851029
16484376
17074753
17081983
18029348
18723115
19322201
20360068
21139048
22053931
22113938
22614839
22745163
22939629
22973032
23000965
24163370
24816145

Gene Ontology  (GO ID)

Biological Process

GO:0033962  cytoplasmic mRNA processing body assembly
GO:0007275  multicellular organismal development
GO:0060340  positive regulation of type I interferon-mediated signaling pathway
GO:0006417  regulation of translation

Cellular Component

GO:0005737  cytoplasm
GO:0000932  cytoplasmic mRNA processing body
GO:0043231  intracellular membrane-bounded organelle
GO:0010494  stress granule

Molecular Function

GO:0003690  double-stranded DNA binding
GO:0003725  double-stranded RNA binding
GO:0003727  single-stranded RNA binding