sorting nexin 5

 jump to detail

Synonym

Sorting nexin-5, sorting nexin 5, SNX5, FLJ10931

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:1.20 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:12.90 bone marrow:- adipose:- bone:- skin:9.60
GeneChip cerebrum:8.06 cerebellum:7.58 brain stem:8.16 corpus callosum/glia:8.56 pineal gland:- peripheral nerve:8.02 spine:8.65 retina:- eye:- artery/aorta:7.71 vein:7.47 lymphnode:8.20 peripheral blood:- spleen:8.73 thymus:7.94 bone marrow:7.82 adipose:8.35 bone:- skin:7.80
CAGE cerebrum:3.46 cerebellum:- brain stem:3.59 corpus callosum/glia:3.65 pineal gland:3.35 peripheral nerve:- spine:3.91 retina:- eye:- artery/aorta:3.65 vein:4.29 lymphnode:4.31 peripheral blood:- spleen:4.59 thymus:3.87 bone marrow:- adipose:3.96 bone:- skin:-
RNA-seq cerebrum:0.82 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:1.24 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:1.36 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:9.10 placenta:- prostate:11.30 ovary:- testis:- heart:- muscle:- esophagus:- stomach:63.70 intestine:- colon:8.50     liver/hepato:-        lung:9.80    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:9.30 salivary:-
GeneChip uterus:8.16 placenta:7.99 prostate:7.92 ovary:8.81 testis:7.23 heart:7.86 muscle:8.01 esophagus:7.81 stomach:8.12 intestine:8.04 colon:8.05 liver/hepato:7.97 lung:8.15 bladder:- kidney:8.95 pituitary:7.95 thyroid/parathyroid:9.53 adrenal gland:8.46 pancreas:7.67 breast:8.02 salivary:7.67
CAGE uterus:3.76 placenta:3.92 prostate:3.76 ovary:4.09 testis:3.38 heart:3.76 muscle:3.80 esophagus:3.67 stomach:- intestine:3.95 colon:4.04     liver/hepato:4.04    lung:3.96 bladder:3.75 kidney:4.32 pituitary:3.43 thyroid/parathyroid:4.89 adrenal gland:- pancreas:3.54 breast:3.87 salivary:3.49
RNA-seq uterus:- placenta:- prostate:1.08 ovary:1.59 testis:2.09 heart:0.14 muscle:0.55 esophagus:- stomach:- intestine:- colon:1.42     liver/hepato:1.67        lung:0.00    bladder:- kidney:0.82 pituitary:- thyroid/parathyroid:2.98 adrenal gland:2.46 pancreas:- breast:1.33 salivary:-

Gene Information

IDs

Refseq ID NM_152227
Gene ID 27131
Unigene ID Hs.316890
Probe set ID 217792_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000089006
GTEx ID ENSG00000089006

Orthologous Gene

Mouse[4]  NM_001199188, NM_024225
Rat[4]  NM_001199188, NM_024225

Chromosomal Region

20p11.23  [17,922,241  -  17,949,623]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

8125298
10600472
11485546
11780052
12477932
14702039
15133132
15489334
15561769
16169070
16344560
16857196
17148574
18596235
18854019
19204726
21139048
21890473
21900206
21906983
21988832
22486813
22505724
22863883
22939629
23000965
23195037
23602387
24097068
24255178
24816145

Gene Ontology  (GO ID)

Biological Process

GO:0007154  cell communication
GO:0006907  pinocytosis
GO:0015031  protein transport

Cellular Component

GO:0030659  cytoplasmic vesicle membrane
GO:0031901  early endosome membrane
GO:0031313  extrinsic to endosome membrane
GO:0031234  extrinsic to internal side of plasma membrane
GO:0070685  macropinocytic cup
GO:0001891  phagocytic cup
GO:0001726  ruffle

Molecular Function

GO:0035091  phosphoinositide binding