homeobox A5

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Synonym

Homeobox protein Hox-A5, homeobox A5, HOX1C, HOX1.3, HOXA5, MGC9376, Hox-1C, homeo box A5

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST nodata
GeneChip cerebrum:4.02 cerebellum:4.02 brain stem:4.66 corpus callosum/glia:3.85 pineal gland:- peripheral nerve:6.62 spine:7.65 retina:- eye:- artery/aorta:5.05 vein:5.49 lymphnode:5.55 peripheral blood:- spleen:5.69 thymus:4.20 bone marrow:4.59 adipose:6.80 bone:- skin:5.40
CAGE cerebrum:0 cerebellum:- brain stem:1.07 corpus callosum/glia:0.52 pineal gland:0 peripheral nerve:- spine:2.95 retina:- eye:- artery/aorta:1.91 vein:1.92 lymphnode:0.20 peripheral blood:- spleen:1.50 thymus:0 bone marrow:- adipose:0.78 bone:- skin:-
RNA-seq cerebrum:0 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:3.35 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:1.52 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST nodata
GeneChip uterus:6.36 placenta:4.11 prostate:5.81 ovary:6.58 testis:4.13 heart:4.77 muscle:5.88 esophagus:4.89 stomach:6.91 intestine:5.88 colon:7 liver/hepato:4.30 lung:7.70 bladder:- kidney:7.82 pituitary:4.15 thyroid/parathyroid:4.38 adrenal gland:9.34 pancreas:4.63 breast:7.34 salivary:3.68
CAGE uterus:0.75 placenta:0.08 prostate:1.40 ovary:2.13 testis:0.78 heart:0.26 muscle:1.40 esophagus:2.40 stomach:- intestine:1.81 colon:1.58     liver/hepato:0.78    lung:3.08 bladder:1.64 kidney:2.67 pituitary:0.10 thyroid/parathyroid:0.67 adrenal gland:- pancreas:0.58 breast:2.27 salivary:0
RNA-seq uterus:- placenta:- prostate:3.31 ovary:2.32 testis:2.05 heart:0.04 muscle:1.86 esophagus:- stomach:- intestine:- colon:3.07     liver/hepato:0.27        lung:3.89    bladder:- kidney:3.66 pituitary:- thyroid/parathyroid:0.53 adrenal gland:2.83 pancreas:- breast:3.14 salivary:-

Gene Information

IDs

Refseq ID NM_019102
Gene ID 3202
Unigene ID -
Probe set ID 213844_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000106004
GTEx ID ENSG00000106004

Orthologous Gene

Mouse[1]  NM_010453
Rat[1]  NM_010453

Chromosomal Region

7p15.2  [27,180,671  -  27,183,287]

Gene Family (Interpro ID)

IPR001356  Homeobox
IPR009057  Homeodomain-like
IPR012287  Homeodomain-related

Link to Pubmed  (Pubmed ID)

1358459
1973146
2568583
2576652
8570656
8646877
8657138
9457903
10397719
10737800
10875927
10879542
11238043
11857506
12163409
12477932
12642491
12690205
12853948
14701762
15489334
15545268
15617687
15684390
15757903
16379594
16756717
17167183
17785556
17804711
17957028
18538349
19322201
19453261
19554572
19938081
20211142
20846263
20890077
21311178
21532573
21546695
21890473
22227861
22464764
22876840
23455924

Gene Ontology  (GO ID)

Biological Process

GO:0009952  anterior/posterior pattern formation
GO:0060441  branching involved in lung morphogenesis
GO:0060435  bronchiole development
GO:0016477  cell migration
GO:0060764  cell-cell signaling involved in mammary gland development
GO:0048704  embryonic skeletal system morphogenesis
GO:0060574  intestinal epithelial cell maturation
GO:0048286  lung alveolus development
GO:0060480  lung goblet cell differentiation
GO:0060484  lung-associated mesenchyme development
GO:0060749  mammary gland alveolus development
GO:0060644  mammary gland epithelial cell differentiation
GO:0060638  mesenchymal-epithelial cell signaling
GO:0035264  multicellular organism growth
GO:0016525  negative regulation of angiogenesis
GO:0045647  negative regulation of erythrocyte differentiation
GO:0043065  positive regulation of apoptosis
GO:0045639  positive regulation of myeloid cell differentiation
GO:0010870  positive regulation of receptor biosynthetic process
GO:0045944  positive regulation of transcription from RNA polymerase II promoter
GO:0033599  regulation of mammary gland epithelial cell proliferation
GO:0003016  respiratory system process
GO:0030878  thyroid gland development
GO:0060535  trachea cartilage morphogenesis
GO:0006351  transcription, DNA-dependent

Cellular Component

GO:0005634  nucleus

Molecular Function

GO:0003677  DNA binding
GO:0005515  protein binding
GO:0043565  sequence-specific DNA binding
GO:0003700  transcription factor activity