heparan sulfate proteoglycan 2

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Synonym

SJA, SJS, HSPG, Perlecan, HSPG2, SJS1, heparan sulfate proteoglycan 2 (perlecan), PLC

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:19

cerebellum:-

brain stem:-

corpus callosum/glia:145.80

pineal gland:-

peripheral nerve:368.10

spine:561.50

retina:-

eye:88.20

artery/aorta:119.90

vein:-

lymphnode:-

peripheral blood:18.20

spleen:75.60

thymus:12.90

bone marrow:19.70

adipose:242

bone:127.90

skin:115.20

GeneChip

cerebrum:6.31

cerebellum:6.59

brain stem:6.27

corpus callosum/glia:6.56

pineal gland:-

peripheral nerve:8.58

spine:6.27

retina:-

eye:-

artery/aorta:9.82

vein:9.35

lymphnode:7.98

peripheral blood:-

spleen:8.27

thymus:6.86

bone marrow:6.58

adipose:9.44

bone:-

skin:8.31

CAGE

cerebrum:1.67

cerebellum:-

brain stem:2.45

corpus callosum/glia:2.58

pineal gland:2.88

peripheral nerve:-

spine:2.35

retina:-

eye:-

artery/aorta:6.09

vein:5.04

lymphnode:3.68

peripheral blood:-

spleen:4.32

thymus:2.73

bone marrow:-

adipose:5.55

bone:-

skin:-

RNA-seq

cerebrum:0.59

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:3.66

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:5.81

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:154.90

placenta:120.20

prostate:135.20

ovary:74.50

testis:30.30

heart:51.10

muscle:80.40

esophagus:-

stomach:42.50

intestine:-

colon:178.10

liver/hepato:-

lung:97.80

bladder:-

kidney:20.80

pituitary:-

thyroid/parathyroid:655

adrenal gland:-

pancreas:62.20

breast:65.10

salivary:-

GeneChip

uterus:9.02

placenta:8.03

prostate:8.19

ovary:8.17

testis:6.89

heart:8.78

muscle:7.54

esophagus:8.08

stomach:8.67

intestine:8.56

colon:8.58

liver/hepato:7.60

lung:8.24

bladder:-

kidney:7.92

pituitary:7.01

thyroid/parathyroid:8.61

adrenal gland:8.86

pancreas:7.32

breast:8.68

salivary:7.89

CAGE

uterus:5.54

placenta:4.67

prostate:5.09

ovary:4.53

testis:3.98

heart:5.29

muscle:4.31

esophagus:5.04

stomach:-

intestine:4.16

colon:5.05

liver/hepato:3.61

lung:4.33

bladder:5.76

kidney:4.27

pituitary:2.92

thyroid/parathyroid:4.31

adrenal gland:-

pancreas:3.78

breast:4.52

salivary:4.09

RNA-seq

uterus:-

placenta:-

prostate:4.52

ovary:3.58

testis:4.15

heart:3.73

muscle:2.44

esophagus:-

stomach:-

intestine:-

colon:4.59

liver/hepato:1.84

lung:3.31

bladder:-

kidney:3.34

pituitary:-

thyroid/parathyroid:3.33

adrenal gland:4.51

pancreas:-

breast:5.21

salivary:-

IDs

Refseq ID	NM_005529
Gene ID	3339
Unigene ID	Hs.562227
Probe set ID	201655_s_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000142798
GTEx ID	ENSG00000142798

Orthologous Gene

Mouse[2]	NM_008305
Rat[2]	NM_008305

Chromosomal Region

1p36.12 [22,148,738 - 22,263,790]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

IPR008985	Concanavalin A-like lectin/glucanase
IPR013320	Concanavalin A-like lectin/glucanase, subgroup
IPR001881	EGF-like calcium-binding
IPR000742	EGF-like, type 3
IPR013106	Immunoglobulin V-set
IPR003596	Immunoglobulin V-set, subgroup
IPR000034	Laminin B type IV
IPR018031	Laminin B, subgroup
IPR001791	Laminin G

Gene Ontology (GO ID)

Biological Process

GO:0001525	angiogenesis
GO:0007420	brain development
GO:0005975	carbohydrate metabolic process
GO:0048738	cardiac muscle tissue development
GO:0060351	cartilage development involved in endochondral bone morphogenesis
GO:0002062	chondrocyte differentiation
GO:0030204	chondroitin sulfate metabolic process
GO:0048704	embryonic skeletal system morphogenesis
GO:0001958	endochondral ossification
GO:0030198	extracellular matrix organization
GO:0006024	glycosaminoglycan biosynthetic process
GO:0006027	glycosaminoglycan catabolic process
GO:0030203	glycosaminoglycan metabolic process
GO:0042157	lipoprotein metabolic process
GO:0007603	phototransduction, visible light
GO:0008104	protein localization
GO:0001523	retinoid metabolic process

Cellular Component

GO:0005605	basal lamina
GO:0031012	extracellular matrix
GO:0005576	extracellular region
GO:0005615	extracellular space
GO:0070062	extracellular vesicular exosome
GO:0005796	Golgi lumen
GO:0043202	lysosomal lumen
GO:0005886	plasma membrane

Molecular Function

GO:0046872	metal ion binding
GO:0005515	protein binding
GO:0008022	protein C-terminus binding

heparan sulfate proteoglycan 2

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function