collagen, type XXVIII, alpha 1

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Synonym

COL28A1, collagen, type XXVIII, alpha 1, COL28

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:2.40 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:92 spine:224.60 retina:- eye:29.40 artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:4.80
GeneChip nodata
CAGE cerebrum:0.01 cerebellum:- brain stem:1.23 corpus callosum/glia:0.24 pineal gland:1.18 peripheral nerve:- spine:1.88 retina:- eye:- artery/aorta:0.95 vein:1.83 lymphnode:0.44 peripheral blood:- spleen:0 thymus:0 bone marrow:- adipose:1.07 bone:- skin:-
RNA-seq cerebrum:0.32 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:1.02 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0.87 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:18.20 prostate:22.50 ovary:- testis:- heart:- muscle:- esophagus:- stomach:- intestine:- colon:8.50     liver/hepato:-        lung:9.80    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:9.30 salivary:-
GeneChip nodata
CAGE uterus:1.70 placenta:0 prostate:1.59 ovary:1.00 testis:0.61 heart:2.00 muscle:0.88 esophagus:2.44 stomach:- intestine:1.66 colon:2.09     liver/hepato:0.63    lung:0 bladder:1.89 kidney:0.15 pituitary:0 thyroid/parathyroid:0.60 adrenal gland:- pancreas:0.94 breast:0.55 salivary:1.49
RNA-seq uterus:- placenta:- prostate:1.93 ovary:0.91 testis:0.97 heart:1.21 muscle:0.62 esophagus:- stomach:- intestine:- colon:3.44     liver/hepato:0.36        lung:0.77    bladder:- kidney:1.04 pituitary:- thyroid/parathyroid:0.34 adrenal gland:0.16 pancreas:- breast:0.19 salivary:-

Gene Information

IDs

Refseq ID NM_001037763
Gene ID 340267
Unigene ID Hs.491104
Probe set ID -
Ensembl ID ENSG00000215018
GTEx ID ENSG00000215018

Orthologous Gene

Mouse[1]  NM_001037865
Rat[1]  NM_001037865

Chromosomal Region

7p21.3  [7,395,834  -  7,575,484]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

12477932
12690205
16330543
19913121
20379614
20628086
20889312
22610502

Gene Ontology  (GO ID)

Biological Process

GO:0007155  cell adhesion
GO:0030198  extracellular matrix organization

Cellular Component

GO:0005604  basement membrane
GO:0005581  collagen
GO:0005788  endoplasmic reticulum lumen
GO:0005576  extracellular region

Molecular Function

GO:0004867  serine-type endopeptidase inhibitor activity