myogenic differentiation 1

Synonym

myogenic factor 3, Myoblast determination protein 1, myogenic differentiation 1, MYOD, MYF3, PUM, MYOD1, Myogenic factor 3, Myf-3

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:-

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:5.90

artery/aorta:-

vein:-

lymphnode:-

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:40.30

bone:-

skin:-

GeneChip

cerebrum:5.38

cerebellum:5.46

brain stem:5.47

corpus callosum/glia:5.30

pineal gland:-

peripheral nerve:5.07

spine:5.09

retina:-

eye:-

artery/aorta:5.37

vein:5.64

lymphnode:5.13

peripheral blood:-

spleen:5.21

thymus:5.05

bone marrow:5.47

adipose:5.30

bone:-

skin:5.29

CAGE

cerebrum:0.03

cerebellum:-

brain stem:0

corpus callosum/glia:0

pineal gland:0

peripheral nerve:-

spine:0

retina:-

eye:-

artery/aorta:0

vein:0

lymphnode:0.17

peripheral blood:-

spleen:0

thymus:0

bone marrow:-

adipose:0.71

bone:-

skin:-

RNA-seq

cerebrum:0.03

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:0.05

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:0

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:-

placenta:10.90

prostate:-

ovary:-

testis:-

heart:-

muscle:80.40

esophagus:-

stomach:-

intestine:-

colon:-

liver/hepato:-

lung:-

bladder:-

kidney:-

pituitary:-

thyroid/parathyroid:-

adrenal gland:-

pancreas:-

breast:-

salivary:-

GeneChip

uterus:5.28

placenta:5.29

prostate:5.07

ovary:5.28

testis:5.20

heart:5.37

muscle:6.36

esophagus:5.26

stomach:5.23

intestine:5.62

colon:5.51

liver/hepato:5.31

lung:5.20

bladder:-

kidney:5.28

pituitary:5.27

thyroid/parathyroid:5.01

adrenal gland:5.18

pancreas:5.47

breast:5.07

salivary:5.23

CAGE

uterus:0.10

placenta:0

prostate:0

ovary:0

testis:0.22

heart:0.03

muscle:2.54

esophagus:0.18

stomach:-

intestine:0

colon:0

liver/hepato:0

lung:0

bladder:0

kidney:0

pituitary:0

thyroid/parathyroid:0.12

adrenal gland:-

pancreas:0

breast:0

salivary:0.36

RNA-seq

uterus:-

placenta:-

prostate:0

ovary:0

testis:0.38

heart:0.03

muscle:1.79

esophagus:-

stomach:-

intestine:-

colon:0

liver/hepato:0

lung:0

bladder:-

kidney:0

pituitary:-

thyroid/parathyroid:0.96

adrenal gland:0.01

pancreas:-

breast:0.13

salivary:-

IDs

Refseq ID	NM_002478
Gene ID	4654
Unigene ID	Hs.181768
Probe set ID	206657_s_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000129152
GTEx ID	ENSG00000129152

Orthologous Gene

Mouse[1]	NM_010866
Rat [0]

Chromosomal Region

11p15.1 [17,741,115 - 17,743,678]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

Gene Ontology (GO ID)

Biological Process

GO:0055007	cardiac muscle cell differentiation
GO:0071385	cellular response to glucocorticoid stimulus
GO:0071453	cellular response to oxygen levels
GO:0009267	cellular response to starvation
GO:0042692	muscle cell differentiation
GO:0042693	muscle cell fate commitment
GO:0007517	muscle organ development
GO:0007518	myoblast cell fate determination
GO:0014904	myotube cell development
GO:0014908	myotube differentiation involved in skeletal muscle regeneration
GO:0051149	positive regulation of muscle cell differentiation
GO:0043415	positive regulation of skeletal muscle tissue regeneration
GO:0045944	positive regulation of transcription from RNA polymerase II promoter
GO:0006468	protein amino acid phosphorylation
GO:0000381	regulation of alternative nuclear mRNA splicing, via spliceosome
GO:0043484	regulation of RNA splicing
GO:0006357	regulation of transcription from RNA polymerase II promoter
GO:0043503	skeletal muscle fiber adaptation
GO:0048741	skeletal muscle fiber development
GO:0007519	skeletal muscle tissue development

Cellular Component

GO:0030016	myofibril
GO:0000790	nuclear chromatin
GO:0005654	nucleoplasm
GO:0005634	nucleus
GO:0005667	transcription factor complex

Molecular Function

GO:0070888	E-box binding
GO:0005515	protein binding
GO:0046982	protein heterodimerization activity
GO:0003705	RNA polymerase II transcription factor activity, enhancer binding
GO:0003713	transcription coactivator activity
GO:0008134	transcription factor binding
GO:0031625	ubiquitin protein ligase binding

myogenic differentiation 1

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function